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view.php
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<?php
ini_set('display_startup_errors', 1);
ini_set('display_errors', 1);
error_reporting(-1);
$fh = null;
if (isset($_GET['id'])) {
$q = $_GET['id'];
}
require "includes/config.php";
include "includes/functions.php";
?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<?php require "includes/head-tag-elements.php"; ?>
</head>
<body>
<div id="wrapper">
<?php require "includes/header.php";
require "includes/nav.php"; ?>
<div id="main-content">
<div id="sidebar">
<div id="categories" class="boxed">
<h2 id="top">Our Services</h2>
<?php require 'includes/sidenav.php'; ?>
<!-- <div style="border:2px solid silver; height: auto; width:100%; border-radius: 10px; margin-top: 10px; margin-bottom: 10px;">
<div><img width="100%" src="images/news_table.gif" /></div>
<marquee behavior="scroll" direction="up" onmouseover="this.setAttribute('scrollamount', 0, 0);this.stop();" onmouseout="this.setAttribute('scrollamount', 6, 0);this.start();" height='250px'>
<p align=center>
<?php require "includes/news.php"; ?>
</p>
</marquee>
</div> -->
<div class="vertical-menu">
<a href="#ProteinName">Protein Name</a>
<a href="#Sequence">Sequence</a>
<a href="#PhosphorylationSites">Phosphorylation Sites</a>
<a href="#keywords">keywords</a>
<a href="#top">Go to Top <i class='fas fa-arrow-alt-circle-up' style='padding-left: 5px; font-size:24px'></i></a>
</div>
</div>
</div>
<div id="posts">
<div class="post">
<h2 class="title">List of Public Databases</h2>
<div class="meta">
<p class="date">Posted on January 20, 2020 by Dr. Shahid Ullah</p>
</div>
<div class="story">
</p>
</div>
</div>
</div>
<div id=posts>
<div class="container">
<div class="row">
<div class="col-12">
<?php
if (isset($_GET['id'])) {
// $q = $_GET['id'];
// $url = "https://www.uniprot.org/uniprot/" . $q . ".xml";
$response = curl_start($url);
// curl_end(curl_start($url));
// get_curl_data($response);
}
?>
<table class="table table-bordered table-responsive" style="max-width: auto; overflow: scroll;">
<thead>
<tr>
<th scope="col">Tag</th>
<th scope="col">Content</th>
</tr>
</thead>
<tbody>
<tr>
<td id="dbPAF">dbPAF ID</td>
<td><?php if (isset($_GET['id'])) {
$q = $_GET['id'];
echo "$q";
}
?>
</td>
</tr>
<tr>
<td id="Uniprot">Uniprot Accession</td>
<td><?php if (isset($_GET['id'])) {
$q = $_GET['id'];
$url = "https://www.uniprot.org/uniprot/" . $q . ".xml";
$response = curl_start($url);
$fh = get_curl_data($response);
curl_end(curl_start($url));
$accession = $fh->entry->accession;
foreach ($accession as $id) {
echo ("<a href='https://www.uniprot.org/uniprot/" . $id . " ' target=_blank>$id<a/>; ");
}
} ?></td>
</tr>
<tr>
<td id="ProteinName">Protein Name</td>
<td>
<?php
$protein = $fh->entry->protein->recommendedName->children();
echo ($protein->fullName); ?>
</td>
</tr>
<tr>
<td id="ProteinSynonyms/Alias">Protein Synonyms/Alias</td>
<td><?php
$protein = $fh->entry->protein->children();
foreach ($protein as $altName) {
echo ($altName->fullName . "<br>");
}
?></td>
</tr>
<tr>
<td id="GeneName">Gene Name</td>
<td><?php
$gene = $fh->entry->gene;
echo ($gene->name); ?></td>
</tr>
<tr>
<td id="Organism">Organism</td>
<td><?php
$organism = $fh->entry->organism->children();
echo ("Scientific: " . $organism->name[0] . " ( ");
echo ("{$organism->name[1]} )");
?></td>
</tr>
<tr>
<td id="NCBITaxaID">NCBI Taxanomy ID</td>
<td><?php
$taxid = $fh->entry->organism->children();
echo "<a href=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=" .
$taxid->dbReference['id'] . " target= '_blank'>"
. $taxid->dbReference['id'] . "</a>";
?></td>
</tr>
<tr>
<td id="FunctionalDescription">Functional Description</td>
<td>
<?php
$ftn = $fh->entry->comment[0];
echo $ftn->text[0];
?>
</td>
</tr>
<tr>
<td id="Sequence">Sequence</td>
<td style="overflow: hidden;">
<?php
echo "<pre>";
$sequence = $fh->entry->sequence;
$string = (string) $sequence;
$string1 = wordwrap($string, 10, " ", true);
$string2 = wordwrap($string1, 90, "\n", true);
echo $string2;
?>
</td>
</tr>
<tr>
<td id="PhosphorylationSites">Phosphorylation Sites</td>
<td>
<?php
$sql = "SELECT * from dbpsa where uniprot_id = '$q' order by uniprot_id asc limit 20";
$sql2 = "SELECT * from dbpsa where uniprot_id = '$q' order by uniprot_id asc";
$result = mysqli_query($conn, $sql);
$result2 = mysqli_query($conn, $sql2);
echo '<div class="text-center">';
echo 'dbPAF PTMs: ' . mysqli_num_rows($result2) . '<a href="#" data-toggle="modal" data-target="#exampleModalCenter"> (View All)</a>';
echo "</div>";
// Model Starts here
echo '
<div class="modal fade bd-example-modal-lg" id="exampleModalCenter" tabindex="-1" role="dialog" aria-labelledby="exampleModalCenterTitle" aria-hidden="true">
<div class="modal-dialog modal-dialog-centered" role="document">
<div class="modal-content">
<div class="modal-header">
<h5 class="modal-title" id="exampleModalLongTitle">Phosphorylation Sites</h5>
<button type="button" class="close" data-dismiss="modal" aria-label="Close">
<span aria-hidden="true">×</span>
</button>
</div>
<div class="modal-body">';
echo "<table width=700px>";
echo '
<tr class="bg-warning" >
<td>Position</td>
<td>Peptides</td>
<td>Source</td>
<td>References ( PMIDs )</td>
</tr>';
while ($row = mysqli_fetch_array($result2)) {
echo "<tr>";
echo "<td>{$row['position']}</td>";
$string = $row['peptide_sequnce'];
$color_string = str_replace("p", "<b><font color=red>p</font></b>", $string);
echo "<td>{$color_string}</td>";
echo "<td></td>";
echo "<td><a href='https://www.ncbi.nlm.nih.gov/pubmed/{$row['pmid']}' target='_blank'>{$row['pmid']}</a></td>";
echo "</tr>";
}
echo "</table>";
echo '</div>
</div>
</div>
</div>
';
// Modal Ends here
echo "<table>";
echo '
<tr class="bg-warning" >
<td>Position</td>
<td>Peptides</td>
<td>Source</td>
<td>References ( PMIDs )</td>
</tr>
';
while ($row = mysqli_fetch_array($result)) {
echo "<tr>";
echo "<td>{$row['position']}</td>";
$string = $row['peptide_sequnce'];
$color_string = str_replace("p", "<b><font color=red>p</font></b>", $string);
echo "<td>{$color_string}</td>";
echo "<td></td>";
echo "<td><a href='https://www.ncbi.nlm.nih.gov/pubmed/{$row['pmid']}' target='_blank'>{$row['pmid']}</a></td>";
echo "</tr>";
}
echo "</table>";
?>
</td>
</tr>
<tr>
<td id="keywords">Keywords</td>
<td>
<?php
$keyword = $fh->entry->keyword;
foreach ($keyword as $child) {
echo "<a href='https://www.uniprot.org/keywords/" . $child['id'] . "' target='_blank'>" . $child['id'] . "</a> -- " . $child . "<br>";
};
?>
</td>
</tr>
<tr>
<td id="interPro">InterPro</td>
<td>
<?php
$dbReference = $fh->entry->dbReference;
?>
</td>
</tr>
</table>
</div>
</div>
</div>
</div>
<?php require 'includes/footer.php'; ?>
</div>
<script type="text/javascript" src="js/nav.js"></script>
</div>
</body>
</html>