From 492969817b3e981fb95d05582ec9353e7b0d4bb3 Mon Sep 17 00:00:00 2001
From: Mantvydas Deltuva <mantvydasdeltuva@gmail.com>
Date: Mon, 15 Apr 2024 20:41:28 +0300
Subject: [PATCH] updated `__init__.py` imports with comments

---
 data_collection/__init__.py | 42 ++++++++++++++++++++++++++++++++++---
 1 file changed, 39 insertions(+), 3 deletions(-)

diff --git a/data_collection/__init__.py b/data_collection/__init__.py
index ef0b10c..0921646 100644
--- a/data_collection/__init__.py
+++ b/data_collection/__init__.py
@@ -11,12 +11,48 @@
 """
 
 # CONSTANTS IMPORT
-from .constants import *
+from .constants import (
+  # URLs for LOVD database
+  LOVD_URL, LOVD_URL_EYS, LOVD_FILE_URL, LOVD_FILE_URL_EYS,
 
+  # URLs for gnomAD database
+  GNOMAD_URL, GNOMAD_URL_EYS, GNOMAD_FILE_URL_EYS,
+
+  # URLs for ClinVar database
+  CLINVAR_URL, CLINVAR_URL_EYS, CLINVAR_FILE_URL_EYS,
+
+  # Paths for data storage
+  DATA_PATH, LOVD_PATH, GNOMAD_PATH, CLINVAR_PATH,
+
+  # Data types for tables
+  LOVD_TABLES_DATA_TYPES,
+
+  # Paths for database downloads
+  DATABASES_DOWNLOAD_PATHS
+)
 
 # DATA COLLECTION IMPORT
-from .collection import *
+from .collection import (
+    # Custom exceptions
+    BadResponseException,
+    DownloadError,
+
+    # Custom utility functions
+    get_file_from_url,
+
+    # Functions for downloading databases
+    download_lovd_database_for_eys_gene,
+    download_genes_lovd,
+    download_database_for_eys_gene,
 
+    # Functions for storing databases
+    store_database_for_eys_gene
+)
 
 # DATA REFACTORING IMPORT
-from .refactoring import *
+from .refactoring import (
+  # Functions for refactoring data
+  convert_lovd_to_datatype,
+  parse_lovd,
+  from_clinvar_name_to_cdna_position
+)