From 5b2de5098bb0bfcbaa3c3c26e7adc201fffad2fb Mon Sep 17 00:00:00 2001 From: Nojux-oficial Date: Fri, 10 May 2024 10:27:29 +0300 Subject: [PATCH] Update CADD's usage --- README.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index e3b2540..585f51f 100644 --- a/README.md +++ b/README.md @@ -19,6 +19,5 @@ spliceai -I ./tests/tools/spliceai/input.vcf -O ./tests/tools/spliceai/actual_ou ## Usage ### CADD CADD SNV scoress can be obtained in JSON format: -``` -python -c 'from tools.CADD.CADD import *; print(fetch_cadd_score("v1.3", 5, 2003402))' -``` \ No newline at end of file + +`python tools/CADD/CADD.py v1.3 5 --position 2003402` or `python tools/CADD/CADD.py GRCh38-v1.4 22 --start 44044001 --end 44044002`