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Releases: StuntsPT/Structure_threader

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12 Jul 14:51
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Changes since v1.2.1

Bug fixes

  • Added more underflow protection.

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07 Jul 16:51
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Changes since v1.2.0

Bug fixes

  • Added an underflow protection.
  • Added a fail-safe in case of MavericK using a single "MainRepeats" parameter.
  • Improved some text strings.

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30 Jun 12:02
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Changes since v1.1.0:

Bug fixes

  • Corrected a few typos in some of the printed messages.
  • Fixed a bug with a nonsensical leading "/" on the windows version.
  • Corrected a bug where MavericK execution stopped due to multiple alpha and alphaPropSD values being set.
  • K plots visualization is now improved when plotting a large number of Ks.

New features:

  • Added option to generate skeleton parameter files (mainparams and extraparams) for STRUCTURE.
  • If wrapping MavericK with TI option turned off, bestK tests are now skipped.
  • Vastly improved unit test suite.
  • New presentation of "bestK" evidence when wrapping MavericK.

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15 May 15:49
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Just a small change on the package description.

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15 May 14:05
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Changes since v1.0.1:

Bug fixes:

  • Fixed a broken link in the docs (Thanks to @briantrice for finding it).
  • Fixed a bug with the file prefixes for drawing plots that required the user to be in the directory where the meanQ files were located.
  • Corrected a bug with the way "fastStructure" was spelled
  • Corrected a bug with population delimiters.

New features:

  • Sanity checks errors and warnings are now also colored.

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10 May 13:41
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Bugfix release:

Fixed a bug with the inconsistent way "fastStructure" was spelled.

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28 Apr 09:28
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Changes since v1.0.0:

Bug fixes:

  • Fixed issue when best K is 1
  • Fixed missing population separators on static .svg plots when using --use-ind-labels
  • Changed a variable name to avoid conflicts, despite being in a different namespace

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26 Apr 22:01
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Declaring a "stable" 1.0.0 version

As of now on, version scheme becomes "MAJOR.MINOR.BUGFIX".

Changes since v0.4.3:

New features:

  • Allow the program to draw the .svg plots only on gray scale (with '-bw' option)
  • Allow the program to show individual label names even when population information is provided (with '--show-ind-labels' option)

Bug fixes:

  • Fixed Qvalue sorting when providing an --ind file with two columns

Bells and whistles

18 Apr 15:59
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Another bugfix release.

  • Fixed a bug where Structure_threader would error out when run without arguments (now it default to "-h" when run without arguments).
  • Fixed a bug where the symlink fo using with fastStructure was built using the full path, which broke when the results were moved. It now uses a more robust (in this case) relative path.

Bells and whistles

17 Mar 22:52
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This is a bugfix release.

  • Fixed a trailing slash on MavericK's output dir on windows
  • Added the .html extension to the plotly drawn plots
  • Added an extra sanity check for the extraparams file