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config.yaml
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config.yaml
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# CDSs from full-length transcripts
proteins_shortlist:
bjap_mm : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.bjap_mm.fasta
bsp_mk : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.bsp_mk.fasta
cl10_yy : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.cl01_yy.fasta
cmag_mm : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.cmag_mm.fasta
cvir_mm : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.cvir_mm.fasta
cvir_yy : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.cvir_yy.fasta
fsal_mm : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.fsal_mm.fasta
gacu_yy : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.gacu_yy.fasta
lstr2_yy : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.lstr2_yy.fasta
lstr_yy : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.lstr_yy.fasta
lx13_yy : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.lx13_yy.fasta
pard_mm : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.pard_mm.fasta
sa331_kh : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.sa331_kh.fasta
sa332_kh : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.sa332_kh.fasta
spol_upp : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.spol_upp.fasta
trac_yy : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.trac_yy.fasta
N10 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N10.fasta
N26 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N26.fasta
N27 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N27.fasta
N34 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N34.fasta
N38 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N38.fasta
N4 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N4.fasta
N44 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N44.fasta
N5 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N5.fasta
N70 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N70.fasta
N72 : /ebio/abt2_projects/ag-swart-karyocode/nb/shortlist-seqs/transcript_shortlist_pep.N72.fasta
ref_bsto : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Blepharisma_stoltei.2021.faa
ref_evan : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Euplotes_vannus.2018-03.faa
ref_imul : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Ichthyophthirius_multifiliis.img1_0407.faa
# ref_lmag : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Loxodes_magnus.MAC_falcon.faa
ref_otri : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Oxytricha_trifallax.2020.faa
ref_pcau : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Paramecium_caudatum_43c3d.v2.faa
ref_ptet : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Paramecium_tetraurelia_51.v2.faa
ref_pmar : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Perkinsus_marinus_ATCC50983.JCVI_PMG_1.faa
ref_pper : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Pseudocohnilembus_persalinus.1_ASM144751v1.faa
ref_sceo : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Stentor_coeruleus.2017-11.faa
ref_slem : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Stylonychia_lemnae.2017-11.faa
ref_tbor : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Tetrahymena_borealis.2012-10.faa
ref_tell : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Tetrahymena_elliotti.2012-10.faa
ref_tmal : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Tetrahymena_malaccensis.2012-10.faa
ref_tthe : /ebio/abt2_projects/ag-swart-karyocode/analysis/busco/db/proteomes/Tetrahymena_thermophila.2020.faa