_pkgdown.yml

template:
  params:
    bootswatch: cosmo
navbar:
  title: ~
  left:
    - text: Classify Your Cells
      menu:
        - text: Prediction using pretrained model
          href: articles/pretrainedModel.html
    - text: Build Your Own Models
      menu:
        - text: scClassify Model Building and Prediction
          href: articles/scClassify.html
        - text: Sample size learning
          href: articles/webOnly/sampleSizeCal.html
        - text: Case study - Tabula Muris Heart
          href: articles/webOnly/scClassify_TM_heart.html
    - text: Functions
      href: reference/index.html
    - text: Pretrained Models
      menu:
        - text: Tasic (2016) (Mouse neuronal)
          href: articles/webOnly/Tasic2016_mouseNeuronal.html
        - text: Tasic (2018) (Mouse neuronal)
          href: articles/webOnly/Tasic2018_mouseNeuronal.html
        - text: Hrvatin (Mouse neuronal)
          href: articles/webOnly/Hrvatin_mouseNeuronal.html
        - text: Cohen (Mouse lung)
          href: articles/webOnly/Cohen_mouseLung.html
        - text: Park (Mouse kidney)
          href: articles/webOnly/Park_mouseKidney.html
        - text: MacParland (Human Liver)
          href: articles/webOnly/MacParlandres_humanLiver.html
        - text: Aizarani (Human Liver)
          href: articles/webOnly/Aizarani_humanLiver.html
        - text: Baron (Human Pancreas)
          href: articles/webOnly/Baron_humanPancreas.html
        - text: Muraro (Human Pancreas)
          href: articles/webOnly/Muraro_humanPancreas.html
        - text: Lawlor (Human Pancreas)
          href: articles/webOnly/Lawlor_humanPancreas.html
        - text: Xin (Human Pancreas)
          href: articles/webOnly/Xin_humanPancreas.html
        - text: Wang (Human Pancreas)
          href: articles/webOnly/Wang_humanPancreas.html
        - text: Segerstolpe (Human Pancreas)
          href: articles/webOnly/Segerstolpe_humanPancreas.html
        - text: Joint (Human Pancreas)
          href: articles/webOnly/Joint_humanPancreas.html
        - text: Joint (Human PBMC)
          href: articles/webOnly/Joint_humanPBMC.html
        - text: Li (Human Melanoma)
          href: articles/webOnly/Li_humanMelanoma.html
        - text: Tabula Muris (Mouse cell atlas)
          href: articles/webOnly/TabulaMuris.html
    - text: Interactive scClassify shiny app (beta)
      icon: fa-star
      href: http://shiny.maths.usyd.edu.au/scClassify/
  right:
    - icon: fa-github fa-lg
      href: https://github.com/SydneyBioX/scClassify