READ_ME.txt

The code in this directory is released under the GNU GPL v3 license.
Please see gpl-3.0.txt for details.

It is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

We have tried to make the pipeline as user-friendly as possible and in most cases, you should only need to edit the parameter files before the analysis can be used on your dataset.
For more details, please see refer to the attached user manual (help.txt).

For more information on the overall CUBIC method, please see the Nature Protocols article for which this code was released: <publication details to be inserted here>.

When using the CUBIC method, please remember to cite the relevant papers.