Welcome to the guidelines for submission, updates and retrieval for the Collaborative OPen Omics project. Please use the links to find instructions specific to your needs.
.. toctree:: :caption: Getting Started :name: getting-started-section about/getting-started about/copo-project-affiliations about/first-time-user-login about/sample-managers-guidelines
.. toctree:: :caption: COPO Profile :name: copo-profile profile/genomics/genomics-profile-walkthrough profile/tol/tol-profile-walkthrough profile/sharing-profiles profile/releasing-profiles profile/sorting-profiles profile/profile-types-legend
.. toctree:: :caption: COPO Data Submission :name: copo-submission submissions/tol-general-submission-guide submissions/files submissions/assemblies submissions/barcoding-manifest-submissions submissions/images submissions/permits submissions/reads submissions/samples submissions/sequence-annotations
.. toctree:: :caption: COPO Data Updates :name: copo-data-updates updates/profile updates/samples updates/sequence-annotations updates/reads updates/useful-tools
.. toctree:: :caption: COPO Data Discovery & Retrieval :name: copo-data-discovery-retrieval retrieval/manifest_templates retrieval/copo-api discovery/manifest-wizard discovery/tol-dashboard retrieval/accessions-dashboard discovery/copo-statistics discovery/manifest-checklist
.. toctree:: :caption: Advanced :name: advanced advanced/project_setup/project-local-setup-index advanced/project_setup/project-application-structure.rst advanced/project_setup/setup-django-admin-interface advanced/profile_setup/profile-setup-index advanced/profile_setup/profile-management-on-django-admin-interface
.. toctree:: :caption: Policies :name: policies policies/fair-data-principles policies/licence policies/code-of-conduct policies/privacy-notice policies/terms-of-use
.. toctree:: :caption: Help :name: help :maxdepth: 2 help/contact help/faq help/glossary
.. toctree:: :caption: Research Outputs & Presentations :name: research outputs and presentations :maxdepth: 2 presentations/presentation-materials contributions/publications