diff --git a/dist/NanoOK.jar b/dist/NanoOK.jar index cb2cbab..d8af6f3 100644 Binary files a/dist/NanoOK.jar and b/dist/NanoOK.jar differ diff --git a/src/nanook/NanoOKOptions.java b/src/nanook/NanoOKOptions.java index 9be5f3a..de8376e 100644 --- a/src/nanook/NanoOKOptions.java +++ b/src/nanook/NanoOKOptions.java @@ -206,6 +206,8 @@ public void parseArgs(String[] args) { System.out.println(" -force to force NanoOK to ignore warnings"); System.out.println(" -timeout to set the number of seconds before giving up waiting for new reads (default 2)"); System.out.println(""); + System.out.println("Valid aligners: last, bwa, blasr, marginalign, graphmap"); + System.out.println(""); System.exit(0); }