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2 parents 0b6e9ee + 9f416fa commit 5b34510Copy full SHA for 5b34510
docs/source/03_02_output_data.md
@@ -109,6 +109,10 @@ The following table describes each of the annotations in the output:
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| Hex_alignment_score_MHCI | the alignment score by HEX for ` Best_affinity_MHCI_epitope ` | HEX |
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| Hex_alignment_score_MHCII | the alignment score by HEX for ` Best_affinity_MHCII_epitope` | HEX |
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+In addition, all logging output is appended to a log file with the suffix
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+"*<folder>/<prefix>.log*", where the folder is set by `--output-folder` and the
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+prefix can be set with `--output-prefix`.
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+
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### Tabular format
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An output table with the suffix "*_neoantigen_candidates_annotated.tsv*" is created.
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