debug_file.json

{
    "sample_name": "20210606_20210131_15-111_BM.h5",
    "base": "/home/daria_l/isilon_images_mnt/10_MetaSystems/MetaSystemsData/Multimodal_Imaging_Daria/Publication/test/MapMetIP_TestDataset/BM",
    "spillover_folder": "/home/daria_l/isilon_images_mnt/10_MetaSystems/MetaSystemsData/Multimodal_Imaging_Daria/Publication/MapMetIP_models/spillover/",
    "docker_folder": "/home/daria_l/isilon_images_mnt/10_MetaSystems/MetaSystemsData/Multimodal_Imaging_Daria/Publication/MapMetIP_models/spillover/out",
    "segmentation_diameter": 55,
    "backgroundcorrection_folder": "/home/daria_l/isilon_images_mnt/10_MetaSystems/MetaSystemsData/Multimodal_Imaging_Daria/Publication/MapMetIP_models/BM/BC_classifiers",
    "save_dir": "/home/daria_l/isilon_images_mnt/10_MetaSystems/MetaSystemsData/Multimodal_Imaging_Daria/Publication/test/MapMetIP_TestDataset/results",
    "refine_threshold": 0.12,
    "segmentation_model":"/home/daria_l/isilon_images_mnt/10_MetaSystems/MetaSystemsData/Multimodal_Imaging_Daria/Publication/MapMetIP_models/BM/segmentation_model/CP_BM",
    "log_path": "/home/daria_l/isilon_images_mnt/10_MetaSystems/MetaSystemsData/Multimodal_Imaging_Daria/Publication/test/MapMetIP_TestDataset/log_files",
    "registration_scale": 1,
    "perform_dimr": "True",
    "extract_neighbors": "False"

}