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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(annotate_SingleR)
export(annotate_hierarchy)
export(annotate_hierarchy_MonacoImmuneData)
export(annotate_merge_by_cluster)
export(barcode_rank)
export(color_parentcluster)
export(color_subcluster)
export(colors_get_distinct)
export(dimred_encircle)
export(dimred_encircle_add)
export(dimred_encircle_groups)
export(dimred_labels_add)
export(droplet_barcodes_debris)
export(droplet_counts_per_compartment)
export(ggplot_set_theme)
export(modalities_load_cellranger_count)
export(modalities_load_kallisto)
export(mtx_balance)
export(mtx_balance_matrix)
export(mtx_load_long)
export(mtx_long_save)
export(plot_alluvial)
export(plot_barcode_rank)
export(plot_connected_barplot)
export(plot_dimred)
export(plot_dots)
export(plot_quadrants)
export(read_kallisto_data)
export(scVI_load)
export(seurat_annotate_SingleR)
export(seurat_dimred_cluster_labels)
export(seurat_dimred_encircle_add)
export(seurat_dimred_labels_add)
export(seurat_plot_alluvial)
export(seurat_plot_connected_barplot)
export(seurat_plot_dimred_counts)
export(subcluster_number)
export(subset_matrix)
export(totalVI_load)
export(translate_ensg_to_symbol)
import(DescTools)
import(SingleCellExperiment)
import(dplyr)
import(ggalluvial)
import(ggplot2)
import(magrittr)
importFrom(DropletUtils,barcodeRanks)
importFrom(Matrix,Matrix)
importFrom(Matrix,cbind2)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,t)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(Seurat,AddMetaData)
importFrom(Seurat,FeaturePlot)
importFrom(Seurat,FetchData)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Key)
importFrom(Seurat,Read10X)
importFrom(Seurat,Reductions)
importFrom(ggnewscale,new_scale)
importFrom(ggnewscale,new_scale_color)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_color_manual)
importFrom(ggrastr,rasterise)
importFrom(ggrepel,geom_label_repel)
importFrom(grDevices,contourLines)
importFrom(ks,kde)
importFrom(patchwork,wrap_plots)
importFrom(purrr,map2_dfr)
importFrom(scater,makePerCellDF)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)