perZ stack acquisition with photometric

[AdvancedImagingUTSW]

Need to confirm that perZ works with Hamamatsu. In @SJShep hand's, it does not work with photometric.

[AdvancedImagingUTSW]

@SJShep - any updates?

[SJShep]

Hi Dean, We had to move the microscopes and ran into a couple of computer hardware issues. I am setting up our ASLM this week to run in linux. The PVCAM and NI drivers are available so we expect it should work. I will keep you posted. Best, Steven

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On Sat, Sep 28, 2024 at 6:10 PM Kevin M. Dean ***@***.***> wrote: @SJShep <https://urldefense.com/v3/__https://github.com/SJShep__;!!IKRxdwAv5BmarQ!dlUIdko5UOOQbqCmF1n12zGaIDPTAx1KUe4PVUD-lemYXk_-xCVRYvXST3gJzT2yqRsUOnozpvFZ3JfwT8e886GW6IUYlA$> - any updates? — Reply to this email directly, view it on GitHub <https://urldefense.com/v3/__https://github.com/TheDeanLab/navigate/issues/914*issuecomment-2381045828__;Iw!!IKRxdwAv5BmarQ!dlUIdko5UOOQbqCmF1n12zGaIDPTAx1KUe4PVUD-lemYXk_-xCVRYvXST3gJzT2yqRsUOnozpvFZ3JfwT8e886F-bdj5JQ$>, or unsubscribe <https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AQFRFQ2PTXO56CJE22CHLN3ZY5HP7AVCNFSM6AAAAABI3F4ZZSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGOBRGA2DKOBSHA__;!!IKRxdwAv5BmarQ!dlUIdko5UOOQbqCmF1n12zGaIDPTAx1KUe4PVUD-lemYXk_-xCVRYvXST3gJzT2yqRsUOnozpvFZ3JfwT8e886EZxg_PoA$> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[AdvancedImagingUTSW]

Hey Steven,

I recently realized that the DCAM drivers are also now available on Linux. This is something that we have wanted for a long time... Many of the NGFF's perform much better on Linux... Let us know if you run into any challenges with getting navigate up and going on a Linux system. We have launched it before, but lacked the camera drivers at the time. Everything seemed to work.

Also, congrats on your paper!

All the best,
Kevin

[SJShep]

Hi Kevin, Installing and launching with synthetic hardware was easy. I will update our experience using the PVCAM this week. Best, Steven

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On Mon, 2024-09-30 at 12:11 -0700, Kevin M. Dean wrote: Hey Steven, I recently realized that the DCAM drivers are also now available on Linux. This is something that we have wanted for a long time... Many of the NGFF's perform much better on Linux... Let us know if you run into any challenges with getting navigate up and going on a Linux system. We have launched it before, but lacked the camera drivers at the time. Everything seemed to work. Also, congrats on your paper! All the best, Kevin — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: ***@***.***>

[AdvancedImagingUTSW]

Hey @SJShep,

Any update on this and can we merge your fix?

Thanks,
Kevin

[SJShep]

Hi @AdvancedImagingUTSW,

I have the instrument up and running well in Ubuntu 22.04 now. Sorry, it's taken so long to share our changes. I will open a pull request to merge now.

Best,
Steven