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VincentGuyaderVincentGuyader
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update github workflow
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‎.github/workflows/R-CMD-check.yaml

Lines changed: 19 additions & 6 deletions
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@@ -1,12 +1,17 @@
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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#
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# NOTE: This workflow is overkill for most R packages and
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# check-standard.yaml is likely a better choice.
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# usethis::use_github_action("check-standard") will install it.
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on:
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push:
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branches: [main, master]
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pull_request:
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branches: [main, master]
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name: R-CMD-check
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name: R-CMD-check.yaml
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permissions: read-all
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jobs:
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R-CMD-check:
@@ -19,17 +24,24 @@ jobs:
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matrix:
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config:
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- {os: macos-latest, r: 'release'}
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- {os: windows-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
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- {os: ubuntu-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'oldrel-1'}
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# use 4.0 or 4.1 to check with rtools40's older compiler
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- {os: windows-latest, r: 'oldrel-4'}
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- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
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- {os: ubuntu-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'oldrel-1'}
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- {os: ubuntu-latest, r: 'oldrel-2'}
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- {os: ubuntu-latest, r: 'oldrel-3'}
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- {os: ubuntu-latest, r: 'oldrel-4'}
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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R_KEEP_PKG_SOURCE: yes
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v4
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- uses: r-lib/actions/setup-pandoc@v2
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@@ -47,3 +59,4 @@ jobs:
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- uses: r-lib/actions/check-r-package@v2
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with:
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upload-snapshots: true
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build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

‎.github/workflows/pkgdown.yaml

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@@ -4,12 +4,13 @@ on:
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push:
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branches: [main, master]
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pull_request:
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branches: [main, master]
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release:
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types: [published]
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workflow_dispatch:
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name: pkgdown
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name: pkgdown.yaml
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permissions: read-all
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jobs:
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pkgdown:
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group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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permissions:
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contents: write
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v4
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- uses: r-lib/actions/setup-pandoc@v2
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@@ -39,7 +42,7 @@ jobs:
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- name: Deploy to GitHub pages 🚀
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if: github.event_name != 'pull_request'
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uses: JamesIves/github-pages-deploy-action@v4.4.1
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uses: JamesIves/github-pages-deploy-action@v4.5.0
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with:
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clean: false
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branch: gh-pages

‎.github/workflows/pr-commands.yaml

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,85 @@
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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on:
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issue_comment:
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types: [created]
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name: pr-commands.yaml
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permissions: read-all
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jobs:
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document:
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if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }}
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name: document
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runs-on: ubuntu-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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permissions:
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contents: write
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steps:
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- uses: actions/checkout@v4
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- uses: r-lib/actions/pr-fetch@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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- uses: r-lib/actions/setup-r@v2
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with:
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v2
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with:
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extra-packages: any::roxygen2
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needs: pr-document
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- name: Document
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run: roxygen2::roxygenise()
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shell: Rscript {0}
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- name: commit
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run: |
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git config --local user.name "$GITHUB_ACTOR"
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git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
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git add man/\* NAMESPACE
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git commit -m 'Document'
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- uses: r-lib/actions/pr-push@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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style:
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if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }}
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name: style
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runs-on: ubuntu-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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permissions:
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contents: write
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steps:
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- uses: actions/checkout@v4
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- uses: r-lib/actions/pr-fetch@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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- uses: r-lib/actions/setup-r@v2
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- name: Install dependencies
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run: install.packages("styler")
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shell: Rscript {0}
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- name: Style
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run: styler::style_pkg()
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shell: Rscript {0}
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- name: commit
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run: |
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git config --local user.name "$GITHUB_ACTOR"
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git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
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git add \*.R
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git commit -m 'Style'
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- uses: r-lib/actions/pr-push@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/test-coverage.yaml

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@@ -4,9 +4,10 @@ on:
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push:
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branches: [main, master]
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pull_request:
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branches: [main, master]
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name: test-coverage
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name: test-coverage.yaml
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permissions: read-all
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jobs:
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test-coverage:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v4
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- uses: r-lib/actions/setup-r@v2
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with:
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v2
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with:
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extra-packages: any::covr
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extra-packages: any::covr, any::xml2
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needs: coverage
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- name: Test coverage
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run: |
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covr::codecov(
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cov <- covr::package_coverage(
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quiet = FALSE,
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clean = FALSE,
34-
install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
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install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
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)
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covr::to_cobertura(cov)
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shell: Rscript {0}
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- uses: codecov/codecov-action@v4
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with:
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# Fail if error if not on PR, or if on PR and token is given
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fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
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file: ./cobertura.xml
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plugin: noop
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disable_search: true
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token: ${{ secrets.CODECOV_TOKEN }}
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- name: Show testthat output
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if: always()
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run: |
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## --------------------------------------------------------------------
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find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
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find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
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shell: bash
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- name: Upload test results
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if: failure()
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uses: actions/upload-artifact@v3
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uses: actions/upload-artifact@v4
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with:
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name: coverage-test-failures
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path: ${{ runner.temp }}/package

‎README.Rmd

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@@ -14,10 +14,11 @@ knitr::opts_chunk$set(
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```
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<!-- badges: start -->
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[![R-CMD-check](https://github.com/ThinkR-open/attachment/workflows/R-CMD-check/badge.svg)](https://github.com/ThinkR-open/attachment/actions)
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[![Coverage status](https://codecov.io/gh/ThinkR-open/attachment/branch/main/graph/badge.svg)](https://app.codecov.io/github/ThinkR-open/attachment/tree/main)
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[![CRAN status](https://www.r-pkg.org/badges/version/attachment)](https://cran.r-project.org/package=attachment)
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![downloads](http://cranlogs.r-pkg.org/badges/attachment)
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[![R-CMD-check](https://github.com/ThinkR-open/attachment/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ThinkR-open/attachment/actions/workflows/R-CMD-check.yaml)
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[![Codecov test coverage](https://codecov.io/gh/ThinkR-open/attachment/graph/badge.svg)](https://app.codecov.io/gh/ThinkR-open/attachment)
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<!-- badges: end -->
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# attachment <img src="man/figures/logo.png" align="right" alt="" width="120" />

‎README.md

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<!-- README.md is generated from README.Rmd. Please edit that file -->
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<!-- badges: start -->
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[![R-CMD-check](https://github.com/ThinkR-open/attachment/workflows/R-CMD-check/badge.svg)](https://github.com/ThinkR-open/attachment/actions)
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[![Coverage
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status](https://codecov.io/gh/ThinkR-open/attachment/branch/main/graph/badge.svg)](https://app.codecov.io/github/ThinkR-open/attachment/tree/main)
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[![CRAN
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status](https://www.r-pkg.org/badges/version/attachment)](https://cran.r-project.org/package=attachment)
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![downloads](http://cranlogs.r-pkg.org/badges/attachment)
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[![R-CMD-check](https://github.com/ThinkR-open/attachment/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ThinkR-open/attachment/actions/workflows/R-CMD-check.yaml)
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[![Codecov test
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coverage](https://codecov.io/gh/ThinkR-open/attachment/graph/badge.svg)](https://app.codecov.io/gh/ThinkR-open/attachment)
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<!-- badges: end -->
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# attachment <img src="man/figures/logo.png" align="right" alt="" width="120" />
@@ -114,22 +116,12 @@ desc_file <- attachment::att_amend_desc(path = dummypackage, inside_rmd = TRUE,
114116
#> 'update.config' was set to TRUE, hence, 'use.config' was forced to FALSE
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#> Saving attachment parameters to yaml config file
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#> Updating dummypackage documentation
117-
#> ────────────────────────────────────────────────────────────────────────────────
118-
#> Changes in roxygen2 7.0.0:
119-
#> * `%` is now escaped automatically in Markdown mode.
120-
#> Please carefully check .Rd files for changes
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#> ────────────────────────────────────────────────────────────────────────────────
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#>
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#> Setting `RoxygenNote` to "7.2.2"
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#> Setting `RoxygenNote` to "7.3.2"
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#> Writing 'NAMESPACE'
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#> ℹ Loading dummypackage
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#> Writing ']8;;file:///tmp/Rtmp3Dpn4h/fakepkg3538450e5c49/dummypackage/NAMESPACENAMESPACE]8;;'
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#> Writing ']8;;file:///tmp/Rtmp3Dpn4h/fakepkg3538450e5c49/dummypackage/NAMESPACENAMESPACE]8;;'
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#> Writing 'NAMESPACE'
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#> ℹ Loading dummypackage
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#> Package(s) Rcpp is(are) in category 'LinkingTo'. Check your Description file to be sure it is really what you want.
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#>
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#> [-] 1 package(s) removed: utils.
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#>
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#> [+] 2 package(s) added: stats, glue.
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134126
# Add Remotes if you have some installed
135127
attachment::set_remotes_to_desc(path.d = desc_file)

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