Run nbdev_export for CI

Author: noahsprent

mmon_gcm/solvemodels.py

@@ -88,7 +88,7 @@
 # %% ../src/2.1_solvingmodel.ipynb 31
 arabidopsis_supermodel.add_maintenance(gc=True, gc_ratio=4.427086760474383e-05);
 
-# %% ../src/2.1_solvingmodel.ipynb 35
+# %% ../src/2.1_solvingmodel.ipynb 53
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -105,10 +105,10 @@
         blue_unconstrained_wt_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 36
+# %% ../src/2.1_solvingmodel.ipynb 54
 blue_unconstrained_wt_solution.to_csv(output_dir + f"blue_unconstrained_wt.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 38
+# %% ../src/2.1_solvingmodel.ipynb 56
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -124,10 +124,10 @@
         blue_unconstrained_starchko_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 39
+# %% ../src/2.1_solvingmodel.ipynb 57
 blue_unconstrained_starchko_solution.to_csv(output_dir + "blue_unconstrained_starchko.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 42
+# %% ../src/2.1_solvingmodel.ipynb 60
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -144,10 +144,10 @@
         blue_constrained_wt_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 43
+# %% ../src/2.1_solvingmodel.ipynb 61
 blue_constrained_wt_solution.to_csv(output_dir + "blue_constrained_wt.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 45
+# %% ../src/2.1_solvingmodel.ipynb 63
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -164,10 +164,10 @@
         blue_constrained_starchko_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 46
+# %% ../src/2.1_solvingmodel.ipynb 64
 blue_constrained_starchko_solution.to_csv(output_dir + "blue_constrained_starchko.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 50
+# %% ../src/2.1_solvingmodel.ipynb 68
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -182,10 +182,10 @@
         white_unconstrained_wt_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 51
+# %% ../src/2.1_solvingmodel.ipynb 69
 white_unconstrained_wt_solution.to_csv(output_dir + "white_unconstrained_wt.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 53
+# %% ../src/2.1_solvingmodel.ipynb 71
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -200,10 +200,10 @@
         white_unconstrained_starchko_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 54
+# %% ../src/2.1_solvingmodel.ipynb 72
 white_unconstrained_starchko_solution.to_csv(output_dir + "white_unconstrained_starchko.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 57
+# %% ../src/2.1_solvingmodel.ipynb 75
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -218,10 +218,10 @@
         white_constrained_wt_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 58
+# %% ../src/2.1_solvingmodel.ipynb 76
 white_constrained_wt_solution.to_csv(output_dir + "white_constrained_wt.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 60
+# %% ../src/2.1_solvingmodel.ipynb 78
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -236,10 +236,10 @@
         white_constrained_starchko_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 61
+# %% ../src/2.1_solvingmodel.ipynb 79
 white_constrained_starchko_solution.to_csv(output_dir + "white_constrained_starchko.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 65
+# %% ../src/2.1_solvingmodel.ipynb 83
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -257,10 +257,10 @@
         nops_unconstrained_wt_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 66
+# %% ../src/2.1_solvingmodel.ipynb 84
 nops_unconstrained_wt_solution.to_csv(output_dir + "nops_unconstrained_wt.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 68
+# %% ../src/2.1_solvingmodel.ipynb 86
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -277,10 +277,10 @@
         nops_unconstrained_starchko_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 69
+# %% ../src/2.1_solvingmodel.ipynb 87
 nops_unconstrained_starchko_solution.to_csv(output_dir + "nops_unconstrained_starchko.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 72
+# %% ../src/2.1_solvingmodel.ipynb 90
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -298,10 +298,10 @@
         nops_unconstrained_wt_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 73
+# %% ../src/2.1_solvingmodel.ipynb 91
 nops_unconstrained_wt_solution.to_csv(output_dir + "nops_constrained_wt.csv")
 
-# %% ../src/2.1_solvingmodel.ipynb 75
+# %% ../src/2.1_solvingmodel.ipynb 93
 # Added this line to explictly set Photon constraint
 arabidopsis_supermodel.constrain_photons(PPFD, printouts=False)
 with arabidopsis_supermodel.fba_model as m:
@@ -318,5 +318,5 @@
         nops_unconstrained_starchko_solution,
     ) = mmon_gcm.solving.get_pfba_fva_solution(m, rxn_list=fva_list, processes=no_processes)
 
-# %% ../src/2.1_solvingmodel.ipynb 76
+# %% ../src/2.1_solvingmodel.ipynb 94
 nops_unconstrained_starchko_solution.to_csv(output_dir + "nops_constrained_starchko.csv")