diff --git a/assets/workflow.svg b/assets/workflow.svg index 9249610..81ec6b8 100644 --- a/assets/workflow.svg +++ b/assets/workflow.svg @@ -1,4 +1,3965 @@ - - - -
old_consensus.fasta
old_consens...
yes
yes
no
no
is a simple repeat
?
is a simple repeat?
simple_repeat.fasta
simple_repeat.fasta
- blastn against the genome
- for each hits, get the sequences with flanking regions (1000 bp)
- multiple alignement (with mafft)
- clean the alignement (with CIAlign)
- call new_consensus.fasta
- blastn against the genome...
yes
yes
no
no
new_consensus
similar to
old_consensus
AND
covered boundaries?
new_consensus...
final_consensus.fasta
final_consensus.fasta
yes
yes
no
no
Is one of two ends is not covered?
Is one of two ends is not covered?
trim the end/s
trim the end/s
yes
yes
no
no
Is one of two ends is covered?
Is one of two ends is covered?
expand the end/s
expand the end/s
new_consensus.fasta
new_consensus.fastaText is not SVG - cannot display \ No newline at end of file + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +