remove redundant filter for minimal hit length

Author: TommasoBarberis

polishTE

@@ -317,7 +317,7 @@ function get_blast_hit() {
     blastn -query $2 -db $3 -outfmt "6 qseqid sseqid pident length mismatch qstart qend sstart send sstrand" -evalue $4 | awk -v "ml=$5" '{OFS="\t"; if ($4 > ml) {print $0}}' >> $1.blast.o
 
     # filter blastn results
-    awk -v cons_len="$8" '{OFS="\t"; if ($1~/^#/) {} else {if ($3 > 80 && $7-$6 > 30 && $7-$6<3*cons_len) {print}}}' < $1.blast.o > $1.blast.tmp.o
+    awk -v cons_len="$8" '{OFS="\t"; if ($1~/^#/) {} else {if ($3 > 80 && $7-$6<3*cons_len) {print}}}' < $1.blast.o > $1.blast.tmp.o
 
     # parse blast result into a bed file
     awk '{OFS="\t"; if ($10~/plus/) {print $2, $8, $9, $1, $3, "+"} else {print $2, $9, $8, $1, $3, "-"}}' < $1.blast.tmp.o > $1.blast.bed