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‎CHANGELOG.md

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# Changelog
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## 0.18.0 (29-11-2020)
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## 0.20.0 (2024-09-20)
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* Fix silenced exception in Queue when using faulty transform by @Zhack47 in https://github.com/fepegar/torchio/pull/1101
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* Fix `RescaleIntensity` by @fepegar in https://github.com/fepegar/torchio/pull/1116
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* Queue length modification with the use of DDP by @haughty-yeon in https://github.com/fepegar/torchio/pull/1127
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* Fix get_subjects_from_batch ignoring metadata by @KonoMaxi in https://github.com/fepegar/torchio/pull/1131
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* Fix random errors in queue test by @fepegar in https://github.com/fepegar/torchio/pull/1142
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* Add masking_method arg name in Mask by @lchauvin in https://github.com/fepegar/torchio/pull/1137
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* Enable plotting of PNG images with alpha channel by @ChristianHinge in https://github.com/fepegar/torchio/pull/1150
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* Fix transforms taking strings instead of sequences by @fepegar in https://github.com/fepegar/torchio/pull/1153
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* Improve docs for "isotropic" arg in RandomAffine by @AminAlam in https://github.com/fepegar/torchio/pull/1163
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* Add support to slice images and subjects by @fepegar in https://github.com/fepegar/torchio/pull/1170
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* Make transform return the same type as input by @haarisr in https://github.com/fepegar/torchio/pull/1182
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* Fix error which copying a subclass of Subject with keyword attributes by @c-winder in https://github.com/fepegar/torchio/pull/1186
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* Add SubjectsLoader by @fepegar in https://github.com/fepegar/torchio/pull/1194
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## 0.19.0 (2023-07-26)
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* Replace p by **kwargs in all transforms by @dmus in https://github.com/fepegar/torchio/pull/370
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* Implementation of include/exclude args by @dmus in https://github.com/fepegar/torchio/pull/373
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* Remove internal self.fill, and keep padding_mode as string or number by @romainVala in https://github.com/fepegar/torchio/pull/378
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* Remove checks and casts to float32 by @dmus in https://github.com/fepegar/torchio/pull/380
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* Fix conversion to Pillow image by @fepegar in https://github.com/fepegar/torchio/pull/385
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* Print image path if probability map is empty by @fepegar in https://github.com/fepegar/torchio/pull/386
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* Remove torchvision requirement by @fepegar in https://github.com/fepegar/torchio/pull/391
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* Fix label sampler and improve error message by @fepegar in https://github.com/fepegar/torchio/pull/394
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* Fix error with invertible custom transforms, also keep include/exclude lists for inverse transforms. by @efirdc in https://github.com/fepegar/torchio/pull/398
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* New label transformations by @efirdc in https://github.com/fepegar/torchio/pull/402
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* Add transform to ensure shape multiple of N by @fepegar in https://github.com/fepegar/torchio/pull/401
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* Allow empty list as input to Compose. by @efirdc in https://github.com/fepegar/torchio/pull/404
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* Cast to float before computing mean by @fepegar in https://github.com/fepegar/torchio/pull/408
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* Add option to keep copies of original images by @fepegar in https://github.com/fepegar/torchio/pull/413
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* Delete image attribute when removing image by @fepegar in https://github.com/fepegar/torchio/pull/415
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* Add option to ignore intensity transforms when inverting by @fepegar in https://github.com/fepegar/torchio/pull/417
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* Add OneHot transform by @fepegar in https://github.com/fepegar/torchio/pull/420
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* Add option to modify interpolation when inverting by @fepegar in https://github.com/fepegar/torchio/pull/418
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* Add some label transforms for binary morphological operations by @fepegar in https://github.com/fepegar/torchio/pull/424
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* Small improvements for Queue by @fepegar in https://github.com/fepegar/torchio/pull/423
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* Fix CropOrPad for 2D images by @fepegar in https://github.com/fepegar/torchio/pull/435
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* Add EPISURG dataset by @fepegar in https://github.com/fepegar/torchio/pull/433
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* Add list of masks functionality to HistogramStandardization.train by @Linardos in https://github.com/fepegar/torchio/pull/446
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* Add support for custom image readers by @fepegar in https://github.com/fepegar/torchio/pull/454
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* Fix probabilities in label sampler by @fepegar in https://github.com/fepegar/torchio/pull/459
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* Use voxels rather than bounds when plotting images by @fepegar in https://github.com/fepegar/torchio/pull/487
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* Add input range kwarg for RescaleIntensity by @fepegar in https://github.com/fepegar/torchio/pull/499
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* Ignore NumPy underflows by @fepegar in https://github.com/fepegar/torchio/pull/503
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* Remove unused imports by @deepsource-autofix in https://github.com/fepegar/torchio/pull/506
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* Remove methods with unnecessary super delegation. by @deepsource-autofix in https://github.com/fepegar/torchio/pull/507
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* Add examples gallery to documentation by @fepegar in https://github.com/fepegar/torchio/pull/508
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* Fix 0 prob random sample in WeightedSampler by @TylerSpears in https://github.com/fepegar/torchio/pull/511
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* Avoid deprecation warnings by @fepegar in https://github.com/fepegar/torchio/pull/517
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* Add functions to process batches by @fepegar in https://github.com/fepegar/torchio/pull/516
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* Make the grid sampler compatible with the queue by @fepegar in https://github.com/fepegar/torchio/pull/520
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* Compress and cleanup downloaded datasets by @fepegar in https://github.com/fepegar/torchio/pull/531
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* Set minimum version for NumPy requirement by @fepegar in https://github.com/fepegar/torchio/pull/532
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* Fix unexpected exception handling by @siahuat0727 in https://github.com/fepegar/torchio/pull/542
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* Fix 'unraveling -1' in the weighted random sampler. by @dvolgyes in https://github.com/fepegar/torchio/pull/551
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* Add Mask transform by @Svdvoort in https://github.com/fepegar/torchio/pull/527
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* Add CopyAffine transform by @albansteff in https://github.com/fepegar/torchio/pull/584
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* Added Image method to convert from sitk to torchio by @mattwarkentin in https://github.com/fepegar/torchio/pull/616
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* Added intensity clamp transform by @mattwarkentin in https://github.com/fepegar/torchio/pull/622
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* Fix default pad value for label maps by @fepegar in https://github.com/fepegar/torchio/pull/627
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* Add tolerance for numeric checks by @justusschock in https://github.com/fepegar/torchio/pull/592
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* Fix syntax error for Python < 3.8 by @fepegar in https://github.com/fepegar/torchio/pull/639
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* Add support to pass shape and affine to Resample by @fepegar in https://github.com/fepegar/torchio/pull/640
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* Fix single slices metadata being lost by @fepegar in https://github.com/fepegar/torchio/pull/641
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* Add Resize transform by @fepegar in https://github.com/fepegar/torchio/pull/642
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* Raise from None to reduce error verbosity by @fepegar in https://github.com/fepegar/torchio/pull/649
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* Add RSNA-MICCAI brain tumor dataset by @fepegar in https://github.com/fepegar/torchio/pull/650
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* Fix visualization for subject with many images by @fepegar in https://github.com/fepegar/torchio/pull/653
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* Fix error when normalization mask is empty by @fepegar in https://github.com/fepegar/torchio/pull/656
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* Enable Indexing by int-Compatible type by @justusschock in https://github.com/fepegar/torchio/pull/670
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* Add support to crop/pad to the mask's bounding box by @fepegar in https://github.com/fepegar/torchio/pull/678
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* Add support to save GIFs by @fepegar in https://github.com/fepegar/torchio/pull/680
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* Add some Visible Human datasets by @fepegar in https://github.com/fepegar/torchio/pull/679
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* Add indices parameter for plotting volumes by @laynr in https://github.com/fepegar/torchio/pull/683
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* Remove channels_last kwarg from Image by @fepegar in https://github.com/fepegar/torchio/pull/685
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* Add parse_input kwarg to Transform by @fepegar in https://github.com/fepegar/torchio/pull/696
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* Cast translation argument to float64 for SimpleITK by @fepegar in https://github.com/fepegar/torchio/pull/702
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* Make Affine take RAS parameters of floating->ref by @fepegar in https://github.com/fepegar/torchio/pull/712
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* Rename master to main by @fepegar in https://github.com/fepegar/torchio/pull/717
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* Add method to show image with external viewer by @fepegar in https://github.com/fepegar/torchio/pull/727
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* Add kwarg to not check spatial consistency by @fepegar in https://github.com/fepegar/torchio/pull/735
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* Retrieve transforms history from batch dictionary by @fepegar in https://github.com/fepegar/torchio/pull/745
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* Add logic to invert OneHot transform by @fepegar in https://github.com/fepegar/torchio/pull/748
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* Fix wrong class when creating subjects from batch by @fepegar in https://github.com/fepegar/torchio/pull/749
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* Minor quality of life functions for inspecting scalar images and label maps by @mattwarkentin in https://github.com/fepegar/torchio/pull/728
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* Fix CropOrPad incorrectly storing bounds by @fepegar in https://github.com/fepegar/torchio/pull/760
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* Fix affine getter for multipath images by @fepegar in https://github.com/fepegar/torchio/pull/763
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* Check data type compatibility for custom reader by @fepegar in https://github.com/fepegar/torchio/pull/770
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* Use PyTorch to shuffle the queue patches by @fepegar in https://github.com/fepegar/torchio/pull/776
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* Fix `Blur` using only the first standard deviation by @fepegar in https://github.com/fepegar/torchio/pull/772
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* Add support to specify the interpolation type for label images by @snavalm in https://github.com/fepegar/torchio/pull/791
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* Fix overlapping in patches aggregator by @fepegar in https://github.com/fepegar/torchio/pull/832
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* Add support for torch >= 1.11 by @snipdome in https://github.com/fepegar/torchio/pull/838
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* Fix new SimpleITK release not being installed by @fepegar in https://github.com/fepegar/torchio/pull/852
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* Fix the wrong mapping in sequential labels transform by @iamSmallY in https://github.com/fepegar/torchio/pull/841
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* Return figure in plot_volume function by @dmus in https://github.com/fepegar/torchio/pull/872
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* Use PyTorch to compute Fourier transforms by @fepegar in https://github.com/fepegar/torchio/pull/389
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* Remove support for Python 3.6 by @fepegar in https://github.com/fepegar/torchio/pull/881
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* Add support to use different numbers of samples in the queue by @fepegar in https://github.com/fepegar/torchio/pull/795
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* Fix computation of kernels in `Blur` transform by @fepegar in https://github.com/fepegar/torchio/pull/861
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* Add support to pass label keys for dict input by @fepegar in https://github.com/fepegar/torchio/pull/879
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* Add support to mask 4D images with 3D masks by @fepegar in https://github.com/fepegar/torchio/pull/908
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* Add fftshift to fourier_transform with torch.fft by @iimog in https://github.com/fepegar/torchio/pull/912
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* Fix copying of subclasses of Subject by @justusschock in https://github.com/fepegar/torchio/pull/794
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* Use tqdm.auto by @fepegar in https://github.com/fepegar/torchio/pull/926
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* Add hann window function in GridAggregator as padding_mode by @LucaLumetti in https://github.com/fepegar/torchio/pull/900
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* Add RSNA 2022 Cervical Spine Fracture Detection dataset by @fepegar in https://github.com/fepegar/torchio/pull/943
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* Replace Click with Typer by @fepegar in https://github.com/fepegar/torchio/pull/978
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* Fix number of samples per subject in queue by @fepegar in https://github.com/fepegar/torchio/pull/981
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* Stop loading data when copying unloaded image by @fepegar in https://github.com/fepegar/torchio/pull/982
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* Add support to pass a callable as padding mode by @mueller-franzes in https://github.com/fepegar/torchio/pull/959
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* Use indexing instead of masked_select for faster normalization by @ramonemiliani93 in https://github.com/fepegar/torchio/pull/1018
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* Remove Visible Human Project datasets by @fepegar in https://github.com/fepegar/torchio/pull/1026
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* Add support for Python 3.11 by @fepegar in https://github.com/fepegar/torchio/pull/1008
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* Make subject parameter mandatory by @fepegar in https://github.com/fepegar/torchio/pull/1029
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* Improve support for queue in distributed training by @hsyang1222 in https://github.com/fepegar/torchio/pull/1021
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* Stop ignoring intensity transforms when computing inverse by @fepegar in https://github.com/fepegar/torchio/pull/1039
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* Add support to invert RescaleIntensity transform by @nicoloesch in https://github.com/fepegar/torchio/pull/998
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* Fix HistogramStandardization example by @vedal in https://github.com/fepegar/torchio/pull/1022
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* Add workflow to validate pull request title by @fepegar in https://github.com/fepegar/torchio/pull/1042
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* Add support to unload images by @fepegar in https://github.com/fepegar/torchio/pull/983
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* Split CI workflows by @fepegar in https://github.com/fepegar/torchio/pull/1047
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* Warn if 'mean' padding mode is used for label maps by @fepegar in https://github.com/fepegar/torchio/pull/1065
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* Fix unloaded image affine not read after CopyAffine by @fepegar in https://github.com/fepegar/torchio/pull/1072
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* Fix custom reader not propagated when copying by @fepegar in https://github.com/fepegar/torchio/pull/1091
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* Remove support for Python 3.7 by @fepegar in https://github.com/fepegar/torchio/pull/1099
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## 0.18.0 (2020-11-29)
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* Add ``FPG`` dataset
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* Optimize cropping in samplers
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* Add support to pass parameters per axis, e.g. for ``RandomAffine`` (#346)
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* Remove deprecated transforms ``Resample`` and ``CenterCropOrPad``
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## 0.17.0 (23-06-2020)
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## 0.17.0 (2020-06-23)
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* Add transforms history to ``Subject`` attributes to improve traceability
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* Add support to use an initial transformation in ``Resample``
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* Improve representation (``repr()``) of ``Image``
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* Use lazy loading in ``Image``
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## 0.16.0 (21-04-2020)
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## 0.16.0 (2020-04-21)
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* Add advanced padding options for ``RandomAffine``
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* Add reference space options in ``Resample``
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* Add probability argument to all transforms
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* Add ``OneOf`` and ``Compose`` transforms to improve composability
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## 0.15.0 (07-04-2020)
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## 0.15.0 (2020-04-07)
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* Refactor ``RandomElasticDeformation`` transform
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* Make ``Subject`` inherit from ``dict``
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## 0.14.0 (31-03-2020)
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## 0.14.0 (2020-03-31)
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* Add ``datasets`` module
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* Add support for DICOM files
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* Add documentation
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* Add ``CropOrPad`` transform
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## 0.13.0 (24-02-2020)
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## 0.13.0 (2020-02-24)
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* Add ``Subject`` class
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* Add random blur transform
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* Add lambda transform
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* Add random patches swapping transform
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* Add MRI k-space ghosting artefact augmentation
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## 0.12.0 (21-01-2020)
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## 0.12.0 (2020-01-21)
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* Add ToCanonical transform
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* Add CenterCropOrPad transform
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## 0.11.0 (15-01-2020)
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## 0.11.0 (2020-01-15)
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* Add Resample transform
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## 0.10.0 (15-01-2020)
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## 0.10.0 (2020-01-15)
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* Add Pad transform
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* Add Crop transform
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## 0.9.0 (14-01-2020)
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## 0.9.0 (2020-01-14)
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* Add CLI tool to transform an image from file
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## 0.8.0 (11-01-2020)
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## 0.8.0 (2020-01-11)
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* Add Image class
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## 0.7.0 (02-01-2020)
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## 0.7.0 (2020-01-02)
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* Make transforms use PyTorch tensors consistently
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## 0.6.0 (02-01-2020)
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## 0.6.0 (2020-01-02)
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* Add support for NRRD
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## 0.5.0 (01-01-2020)
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## 0.5.0 (2020-01-01)
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* Add bias field transform
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## 0.4.0 (29-12-2019)
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## 0.4.0 (2019-12-29)
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* Add MRI k-space motion artefact augmentation
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## 0.3.0 (21-12-2019)
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## 0.3.0 (2019-12-21)
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* Add Rescale transform
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* Add support for multimodal data and missing modalities

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