From 2e7b843ba3f6326183328d757021708d79dc0831 Mon Sep 17 00:00:00 2001 From: UBrau Date: Fri, 23 Oct 2020 11:21:28 -0400 Subject: [PATCH] Fix accidental deletion --- 3_combine.pl | 2 ++ 1 file changed, 2 insertions(+) diff --git a/3_combine.pl b/3_combine.pl index 19cebad..de9fa3f 100755 --- a/3_combine.pl +++ b/3_combine.pl @@ -107,12 +107,14 @@ # Generate files for expression analysis +mkdir $outDir."/expression" unless (-e $outDir."/expression"); system "$path/R/combine_reads_expression.R -e $evTab -t $treatTab -d fwd -c $cores $outDir" and die "[3] Error when combining reads for expression\n"; print "[3] Done generating tables for expression\n"; # Get PSI, RPM, pseudo counts etc. per well +mkdir $outDir."/welldata" unless (-e $outDir."/welldata"); system "$path/R/compute_psi_rpm.R -c $cores $outDir -e $evTab" and die "[3] Error when calculating PSI etc.\n"; print "[3] Done computing PSI\n";