Notes, Ideas and Thoughts

To do

FS19C

GO term enrichment of roary and/or DRAM output?
- Roary output: translate the pan_genome_reference.fa fasta file to AA sequence, and then run through interproscan.
Discussions with Jules and Crystal: converting presence/absence data from metabolism_summary.xlsx into an ordination to see which commensals fall closer to STEC and could be candidates for further study. Can also color code and include virulence genes.
ppangolin: get fasta file of gene families or protein families, find out which ones are present/absent in STEC, commensals - blast those fasta files

Ceres

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