fmr_11665_KLR

#!/bin/bash
#SBATCH -J fmriprep_r33_11665    # Job name
#SBATCH -o fmr_11665_KLR_o       # Name of stdout output file
#SBATCH -e fmr_11665_KLR_e       # Name of stderr error file
#SBATCH -p normal      # Queue (partition) name
#SBATCH -N 1               # Total # of nodes (must be 1 for serial)
#SBATCH -n 32               # Total # of mpi tasks (should be 1 for serial)
#SBATCH -t 32:00:00        # Run time (hh:mm:ss)
#SBATCH --mail-user=kimray@utexas.edu
#SBATCH --mail-type=all    # Send email at begin and end of job
#SBATCH -A Machine-learning-app       # Allocation name (req'd if you have more than 1)
module load tacc-singularity
singularity run --cleanenv /work/06089/mcm5324/stampede2/singularity/fmriprep-latest.simg     /scratch/05231/klray/R33/BIDS /scratch/05231/klray/     participant     --nthreads 32 --omp-nthreads 32  --mem_mb 32000     --ignore slicetiming     --fs-no-reconall     --fs-license-file /work/04171/dpisner/stampede2/freesurfer/license.txt     -w /scratch/05231/klray/R33/     --participant-label 11665