-
Notifications
You must be signed in to change notification settings - Fork 7
/
NEWS
62 lines (43 loc) · 2.04 KB
/
NEWS
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
Version 1.3.22
-------------------------
NEW FEATURES
o New stand alone functions that don't require shiny app : bsj_to_circRNA_sequence() and bsj_fastq_generate()
BUG FIXES
o BUG fix: All warnings in bioconductor now resolved
o BUG fix: Added dependencies to DESCRIPTION to allow automatic install
Version 1.3.1
-------------------------
BUG FIXES
o BUG fix: Fixed code in Compatible_Annotation_DBs examples that was causing error in bioconductor builds.
Version 1.2.2
-------------------------
NEW FEATURES
o Can now accept CIRI2 and circExplorer inputs
o Automatically group samples upon import
Version 1.2.1
-------------------------
BUG FIXES
o BUG fix: when user selects table entry from group data it now is automatically selected in gene view
CHANGES IN VERSION 1.2.0
-------------------------
NEW FEATURES
o Added a stand alone function to generate fastq files from chimeric output. This is a stand alone feature (i.e. not from within Ularcirc shiny app) which is run from R command prompt.
o Ularcirc now compatible with STAR 2.6 chimeric output.
o Added new metric called "FSJ support", which can be used to filter out false positives from low count (ie. < 10) BSJ data. Can also be applied to entire data set. This should not be used for RNase R treated data sets.
o Added Ularcirc shiny app button to generate PCA plot once groups are defined.
o Can now read in geneReads count matrix generated by STAR aligner.
o Added download buttons for displayed tabled under "Gene_view" tab
BUG FIXES
o Improved methodology in calculating RAD score.
o Fixed error when merging BSJ counts from unstranded RNA-Seq data.
o Fixed TwoSzabo data set which was previously corrupted. Added ReadsPerGene.
o Changed various text on various buttons and menu screens
Removed
- filter based on count number
- side bar check menu boxes of unimplemented or redunant functions.
Version 1.0.0
------------------------
o Bioconductor release.
Version 0.99.0
------------------------
o Pre-Bioconductor submission.