Ray amos file

[demis001]

Test how Ray generate amos alignment file using different ray options. Some contig in the amos file doesn't have read assigned to it.

[demis001]

`Velvet` produces an `afg` file that can easily be converted in a bank file and processed with `amosvalidate`. Also `Ray`produces an `afg` file that, however, is incomplete ( missing library description and paired end information).

Source: http://www.nada.kth.se/~vezzi/publications/supplementary.pdf

[necrolyte2]

sebhtml/ray#238

@averagehat
@bpfeffer

[averagehat]

sebhtml/ray/issues/65

@demis001 could you try creating the bank the way it's described in the above issue?

Edit: Amos Message Format

[demis001]

@necrolyte2

Can you change the permission to 'rw' on Share/AmosTesting?

[demis001]

@averagehat

bank-transact -b AMOS.bnk -c -m AMOS.afg
START DATE: Thu Apr 23 09:37:00 2015
Bank is: AMOS.bnk
    0%                                            100%
AFG ..................................................
Messages read: 327100
Objects added: 327100
Objects deleted: 0
Objects replaced: 0
END DATE:   Thu Apr 23 09:37:13 2015