config.toml

# Configeration file I have been using for testing
[general]
threads = 8
output_directory = "./output"

[command]
target_files = [
  "/Users/kieran/Documents/BathWorkDocs/RNAPipelineProject/Reference files/miRNA_sratti_hairpin_incNovel.fasta",
  "/Users/kieran/Documents/BathWorkDocs/RNAPipelineProject/Reference files/rRNA_srattiWB.fasta",
  "/Users/kieran/Documents/BathWorkDocs/RNAPipelineProject/Reference files/strongyloides_ratti.PRJEB125.WBPS12.CDS_transcripts.fasta",
  "/Users/kieran/Documents/BathWorkDocs/RNAPipelineProject/Reference files/TE_sequences.fasta",
  "/Users/kieran/Documents/BathWorkDocs/RNAPipelineProject/Reference files/tRNA_sratti_WB.fasta"
]

[cli-tools]
[cli-tools.trim]
trim_pass_threads = true
trim_type = ""
trim_parms = []

[cli-tools.fastqc]
fastqc_pass_threads = true
path_to_fastqc = "/Applications/FastQC.app/Contents/MacOS/fastqc"
fastqc_params = []

[cli-tools.unitas]
path_to_unitas = ""
unitas_params = []