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Make it easier to find the data source(s) for given neurons and how to get it. A mock example of how this could work for a CATMAID data source:
# Get data sources for a set of neurons>>>ds=vc.get_data_source([12345])
>>>dsaccessionsourceurlproject_idsuggested_tool012345CATMAIDhttps://fafb.catmaid.virtualflybrain.org/1pymaid# Explicit example>>>vc.get_data_source_example(12345)
Installpymaid (https://pymaid.readthedocs.io/en/latest/) thenrunthis:
importpymaidrm=pymaid.connect_catmaid(server="https://fafb.catmaid.virtualflybrain.org/", api_token=None)
n=pymaid.get_neuron(12345)
Alternatively, you could wrap neuprint and pymaid (as soft dependencies perhaps) and provide a couple common entry points for e.g. getting skeletons or connectivity.
The text was updated successfully, but these errors were encountered:
Just adding things as they pop up:
Alternatively, you could wrap neuprint and pymaid (as soft dependencies perhaps) and provide a couple common entry points for e.g. getting skeletons or connectivity.
The text was updated successfully, but these errors were encountered: