Thank you very much for developing this R package. However, I’ve recently encountered some issues while using it.
When I use a 2Mb interval for plotting, I ensure that my data contains at least one SNP in each bin, but the resulting plot still shows many gray bins：
The code I used is as follows:CMplot(data, plot.type = "d", bin.size = 2e6, col = c("darkgreen", "yellow", "red"), file = "tiff", dpi = 600, file.output = FALSE, verbose = TRUE)
To rule out issues caused by my personal operations, I used the pig60K example data and the corresponding example code for testing, but the results still did not meet expectations. I also conducted tests on other computers.
Looking forward to your answer！
Thank you very much for developing this R package. However, I’ve recently encountered some issues while using it.
When I use a 2Mb interval for plotting, I ensure that my data contains at least one SNP in each bin, but the resulting plot still shows many gray bins：
The code I used is as follows:
CMplot(data, plot.type = "d", bin.size = 2e6, col = c("darkgreen", "yellow", "red"), file = "tiff", dpi = 600, file.output = FALSE, verbose = TRUE)To rule out issues caused by my personal operations, I used the pig60K example data and the corresponding example code for testing, but the results still did not meet expectations. I also conducted tests on other computers.
Looking forward to your answer！