Hi,
thanks for the package.
I'm trying to make a circular plot, but I can't change the angle of the chromosome label. No matter which angle I use, the plot is always the same.
example:
CMplot(pig60K,type="p",plot.type="m",r=0.4,col=c("grey30","grey60"),chr.labels=paste("Chr",c(1:18,"X","Y"),sep=""),chr.labels.angle=45,
threshold=c(1e-6,1e-4),cir.chr.h=1.5,amplify=TRUE,threshold.lty=c(1,2),threshold.col=c("red",
"blue"),signal.line=1,signal.col=c("red","green"),chr.den.col=c("darkgreen","yellow","red"),
bin.size=1e6,outward=FALSE,file="jpg",file.name=NULL,dpi=300,file.output=FALSE,verbose=TRUE,width=10,height=10)
is it possible that the option is not available for the circular plot but is only for the rectangular plot?
thanks in advance
Gabriele
Hi,
thanks for the package.
I'm trying to make a circular plot, but I can't change the angle of the chromosome label. No matter which angle I use, the plot is always the same.
example:
CMplot(pig60K,type="p",plot.type="m",r=0.4,col=c("grey30","grey60"),chr.labels=paste("Chr",c(1:18,"X","Y"),sep=""),chr.labels.angle=45,
threshold=c(1e-6,1e-4),cir.chr.h=1.5,amplify=TRUE,threshold.lty=c(1,2),threshold.col=c("red",
"blue"),signal.line=1,signal.col=c("red","green"),chr.den.col=c("darkgreen","yellow","red"),
bin.size=1e6,outward=FALSE,file="jpg",file.name=NULL,dpi=300,file.output=FALSE,verbose=TRUE,width=10,height=10)
is it possible that the option is not available for the circular plot but is only for the rectangular plot?
thanks in advance
Gabriele