From 7f331ab30840e3eb9c3fe75c940a6197d3e29471 Mon Sep 17 00:00:00 2001
From: Guangchuang Yu <guangchuangyu@gmail.com>
Date: Thu, 20 Jun 2024 18:17:21 +0800
Subject: [PATCH] update

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 publications/index.html | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

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@@ -181,7 +181,7 @@ <h2 id="i-classfa-fa-calendar-fa-1x-aria-hiddentruei-2024">
 <ul>
 <li>S Xu<sup>#</sup>, E Hu<sup>#</sup>, Y Cai<sup>#</sup>, Z Xie<sup>#</sup>, X Luo<sup>#</sup>, L Zhan, W Tang, Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, <strong>G Yu</strong><sup>*</sup>. <a href="" >Using clusterProfiler to characterise Multi-Omics Data</a>. <strong><em>Nature Protocols</em></strong>. 2024, accepted.</li>
 <li>L Li, W Xie, L Zhan, S Wen, X Luo, S Xu, Y Cai, W Tang, Q Wang, M Li, Z Xie, L Deng, H Zhu, <strong>G Yu</strong><sup>*</sup>. <a href="https://www.sciencedirect.com/science/article/pii/S2667005424000206"  class="external-link" target="_blank" rel="noopener">Resolving Tumor Evolution: A Phylogenetic Approach</a>. <strong><em>Journal of the National Cancer Center</em></strong>. 2024, accepted.</li>
-<li>L Zhan<sup>#</sup>, X Luo<sup>#</sup>, W Xie<sup>#</sup>, XA Zhu<sup>#</sup>, Z Xie, J Lin, L Li, W Tang, R Wang, L Deng, Y Liao, B Liu, Y Cai, Q Wang, S Xu<sup>*</sup>, <strong>G Yu</strong><sup>*</sup>. <a href="https://www.sciencedirect.com/science/article/pii/S167385272400033X"  class="external-link" target="_blank" rel="noopener">shinyTempSignal: an R shiny application for exploring temporal and other phylogenetic signals</a>. <strong><em>Journal of Genetics and Genomics</em></strong>. 2024, accepted.</li>
+<li>L Zhan<sup>#</sup>, X Luo<sup>#</sup>, W Xie<sup>#</sup>, XA Zhu<sup>#</sup>, Z Xie, J Lin, L Li, W Tang, R Wang, L Deng, Y Liao, B Liu, Y Cai, Q Wang, S Xu<sup>*</sup>, <strong>G Yu</strong><sup>*</sup>. <a href="https://www.sciencedirect.com/science/article/pii/S167385272400033X"  class="external-link" target="_blank" rel="noopener">shinyTempSignal: an R shiny application for exploring temporal and other phylogenetic signals</a>. <strong><em>Journal of Genetics and Genomics</em></strong>. 2024, 51(7):762-768.</li>
 <li>Q Wang, W Tang, L Chen, L Deng, <strong>G Yu</strong><sup>*</sup>. <a href="https://doi.org/10.1016/j.xinn.2024.100637"  class="external-link" target="_blank" rel="noopener">Decoding the Brain: Unveiling Comprehensive Cellular Atlases through Multiomics Mega Data</a>. <strong><em>The Innovation</em></strong>. 2024, 5(4):100637.</li>
 <li>Y Cai<sup>#</sup>, W Hu<sup>#</sup>, Y Pei, Hao Zhao<sup>*</sup>, <strong>G Yu</strong><sup>*</sup>. <a href="https://doi.org/10.1016/j.xinn.2024.100627"  class="external-link" target="_blank" rel="noopener">Encoding biological metaverse: Advancements and challenges in neural fields from macroscopic to microscopic</a>. <strong><em>The Innovation</em></strong>. 2024, 5(3):100627.</li>
 <li>Y Lai<sup>#</sup>, W Tang<sup>#</sup>, X Luo, H Zheng, Y Zhang<sup>*</sup>, M Wang<sup>*</sup>, <strong>G Yu</strong><sup>*</sup>, Min Yang<sup>*</sup>. <a href="https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2024.1369116"  class="external-link" target="_blank" rel="noopener">Gut microbiome and metabolome to discover pathogenic bacteria and probiotics in ankylosing spondylitis</a>. <strong><em>Frontiers in Immunology</em></strong>. 2024, 15:1369116.</li>
@@ -197,12 +197,12 @@ <h2 id="i-classfa-fa-calendar-fa-1x-aria-hiddentruei-2023">
   </a>
 </h2>
 <ul>
-<li>X Zhang, B Liang, Y Huang, H Meng, Z Li, J Du, L Zhou, Y Zhong, B Wang, X Lin, <strong>G Yu</strong>, X Chen, W Lu, ZS Chen, X Yang, Z Huang<sup>*</sup>. <a href="https://doi.org/10.1002/advs.202303753"  class="external-link" target="_blank" rel="noopener">Behind the Indolent Facade: Uncovering the Molecular Features and Malignancy Potential in Lung Minimally Invasive Adenocarcinoma by Single-Cell Transcriptomics</a>. <strong><em>Advanced Science</em></strong>. 2023, 10(36):2303753.</li>
-<li>M Kang, F Lin, Z Jiang, X Tan, X Lin, Z Liang, C Xiao, Y Xia, W Guan, Z Yang, <strong>G Yu</strong>, M Zanin, S Tang<sup>*</sup>, SS Wong<sup>*</sup>. <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/irv.13172"  class="external-link" target="_blank" rel="noopener">The impact of pre-existing influenza antibodies and inflammatory status on the influenza vaccine responses in older adults</a>. <strong><em>Influenza and Other Respiratory Viruses</em></strong>. 2023, 17(7):e13172.</li>
-<li>W Tang, H Zheng, S Xu, P Li, L Zhan, X Luo, Z Dai, Q Wang, <strong>G Yu</strong><sup>*</sup>. <a href="https://dx.doi.org/10.1080/19490976.2023.2223349"  class="external-link" target="_blank" rel="noopener">MMINP: A computational framework of microbe-Metabolite interactions-based metabolic profiles predictor based on the O2-PLS algorithm</a>. <strong><em>Gut Microbes</em></strong>. 2023, 15(1):2223349.</li>
+<li>X Zhang, B Liang, Y Huang, H Meng, Z Li, J Du, L Zhou, Y Zhong, B Wang, X Lin, <strong>G Yu</strong>, X Chen, W Lu, ZS Chen, X Yang, Z Huang<sup>*</sup>. <a href="https://doi.org/10.1002/advs.202303753"  class="external-link" target="_blank" rel="noopener">Behind the Indolent Facade: Uncovering the Molecular Features and Malignancy Potential in Lung Minimally Invasive Adenocarcinoma by Single-Cell Transcriptomics</a>. <strong><em>Advanced Science</em></strong>. 2023, 10(36):2303753. (IF = 14.3)</li>
+<li>M Kang, F Lin, Z Jiang, X Tan, X Lin, Z Liang, C Xiao, Y Xia, W Guan, Z Yang, <strong>G Yu</strong>, M Zanin, S Tang<sup>*</sup>, SS Wong<sup>*</sup>. <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/irv.13172"  class="external-link" target="_blank" rel="noopener">The impact of pre-existing influenza antibodies and inflammatory status on the influenza vaccine responses in older adults</a>. <strong><em>Influenza and Other Respiratory Viruses</em></strong>. 2023, 17(7):e13172. (IF = 4.3)</li>
+<li>W Tang, H Zheng, S Xu, P Li, L Zhan, X Luo, Z Dai, Q Wang, <strong>G Yu</strong><sup>*</sup>. <a href="https://dx.doi.org/10.1080/19490976.2023.2223349"  class="external-link" target="_blank" rel="noopener">MMINP: A computational framework of microbe-Metabolite interactions-based metabolic profiles predictor based on the O2-PLS algorithm</a>. <strong><em>Gut Microbes</em></strong>. 2023, 15(1):2223349. (IF = 12.2)</li>
 <li><strong>余光创（著）</strong>, 李林, 罗晓（译）. R实战：系统发育树的数据集成操作及可视化. <strong><em>电子工业出版社</em></strong>, 2023. ISBN: <a href="https://u.jd.com/uu7G4qC"  class="external-link" target="_blank" rel="noopener">9787121451829</a>  <a href="/images/treedata-jd-top1.jpg" ><i class="fa fa-book fa-2x" aria-hidden="true" style="color:black;font-size: 150%;"></i></a></li>
-<li>S Xu, L Zhan, W Tang, Q Wang, Z Dai, L Zhou, T Feng, M Chen, T Wu, E Hu, <strong>G Yu</strong><sup>*</sup>. <a href="https://doi.org/10.1016/j.xinn.2023.100388"  class="external-link" target="_blank" rel="noopener">MicrobiotaProcess: A comprehensive R package for deep mining microbiome</a>. <strong><em>The Innovation</em></strong>. 2023, 4(2):100388.</li>
-<li>S Guo<sup>*</sup>, D Zhang, H Wang, Q An, <strong>G Yu</strong>, J Han, C Jiang, J Huang. <a href="https://www.frontiersin.org/articles/10.3389/fmed.2023.1146896/full"  class="external-link" target="_blank" rel="noopener">Computational and Systematic Analysis of Multi-omics Data for Drug Discovery and Development</a>. <strong><em>Frontiers in Medicine</em></strong>. 2023, 10:1146896.</li>
+<li>S Xu, L Zhan, W Tang, Q Wang, Z Dai, L Zhou, T Feng, M Chen, T Wu, E Hu, <strong>G Yu</strong><sup>*</sup>. <a href="https://doi.org/10.1016/j.xinn.2023.100388"  class="external-link" target="_blank" rel="noopener">MicrobiotaProcess: A comprehensive R package for deep mining microbiome</a>. <strong><em>The Innovation</em></strong>. 2023, 4(2):100388. (IF = 33.2)</li>
+<li>S Guo<sup>*</sup>, D Zhang, H Wang, Q An, <strong>G Yu</strong>, J Han, C Jiang, J Huang. <a href="https://www.frontiersin.org/articles/10.3389/fmed.2023.1146896/full"  class="external-link" target="_blank" rel="noopener">Computational and Systematic Analysis of Multi-omics Data for Drug Discovery and Development</a>. <strong><em>Frontiers in Medicine</em></strong>. 2023, 10:1146896. (IF = 3.1)</li>
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 <h2 id="i-classfa-fa-calendar-fa-1x-aria-hiddentruei-2022">
   <i class="fa fa-calendar fa-1x" aria-hidden="true"></i> 2022