Dockerfile

FROM rocker/r-ver:4.1.3

LABEL authors="Manuel Schoenberger <manuel.schoenberger@othr.de>"

ENV DEBIAN_FRONTEND noninteractive
ENV LANG="C.UTF-8"
ENV LC_ALL="C.UTF-8"

# Install required packages
RUN apt-get update && apt-get install -y \
		wget \
        python3.8 \
        python3-pip \
        texlive-latex-base \
        texlive-science \
        texlive-fonts-recommended \
        texlive-publishers \
        texlive-bibtex-extra \
		libcairo2-dev \
		libxt-dev \
		libudunits2-dev \
		libproj15 \
		libgdal-dev \
        biber 
		
# Install R Packages
RUN R -e "install.packages('ggplot2')"
RUN R -e "install.packages('ggh4x')"
RUN R -e "install.packages('ggpmisc')"

RUN R -e "install.packages('ggrastr')"
RUN R -e "install.packages('ggpattern')"
RUN R -e "install.packages('ggfortify')"

RUN R -e "install.packages('dplyr')"
RUN R -e "install.packages('forcats')"
RUN R -e "install.packages('stringr')"

RUN R -e "install.packages('scales')"
RUN R -e "install.packages('tidyr')"
RUN R -e "install.packages('tibble')"
RUN R -e "install.packages('tikzDevice')"

# Add user
RUN useradd -m -G sudo -s /bin/bash repro && echo "repro:repro" | chpasswd
RUN usermod -a -G staff repro
USER repro

# Add artifacts (from host) to home directory
ADD --chown=repro:repro . /home/repro/sigmod-repro

WORKDIR /home/repro/sigmod-repro

# Install Gurobi
RUN mkdir gurobi
WORKDIR /home/repro/sigmod-repro/gurobi
RUN wget https://packages.gurobi.com/10.0/gurobi10.0.2_linux64.tar.gz
RUN tar -xvf gurobi10.0.2_linux64.tar.gz
WORKDIR /home/repro/sigmod-repro

# install python packages
ENV PATH $PATH:/home/repro/.local/bin
RUN pip3 install -r requirements.txt

# Gurobi ENV variables
ENV GUROBI_HOME="/home/repro/sigmod-repro/gurobi/gurobi1002/linux64"
ENV PATH $PATH:/home/repro/sigmod-repro/gurobi/gurobi1002/linux64/bin
ENV LD_LIBRARY_PATH $GUROBI_HOME/bin

ENTRYPOINT ["./scripts/run.sh"]
CMD ["bash"]