Our paper is now out! Vyshenska D* and Sampara P* et al. A standardized quantitative analysis strategy for stable isotope probing metagenomics. Msystems 2023; e01280-22
Package description: SIPmg is a statistical analysis package as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating MAGs.The package utilizes either the qSIP model, ΔBD method, or DeSeq2-based methods such as HR-SIP and MW-HR-SIP based on the HTSSIP package. For more information on HTSSIP R package, please visit their vignette
For more information about SIPmg and how to use it, please see the SIPmg vignette