Python Wrappers for the PetaKit5D image processing pipeline
This package is currently only available for Linux and has been tested with Python 3.11 but other versions may also work
The installation may take a long time
pip install --no-binary :all: --no-cache-dir PyPetaKit5D
It is recommended to use -v as it makes the uninstall much faster for this package
pip uninstall PyPetaKit5D -v
Please refer to the example notebooks for step-by-step usage examples using our demo datasets. For a more detailed explanation of all the input variables, you can refer to PetaKit5D's documentation or our GUI's wiki
Please cite our software if you find it useful in your work:
Xiongtao Ruan, Matthew Mueller, Gaoxiang Liu, Frederik Görlitz, Tian-Ming Fu, Daniel E. Milkie, Joshua L. Lillvis, Alexander Kuhn, Chu Yi Aaron Herr, Wilmene Hercule, Marc Nienhaus, Alison N. Killilea, Eric Betzig, Srigokul Upadhyayula. Image processing tools for petabyte-scale light sheet microscopy data. Nature Methods (2024). https://doi.org/10.1038/s41592-024-02475-4