-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathNAMESPACE
163 lines (162 loc) · 4.21 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
# Generated by roxygen2: do not edit by hand
export(addToPathEnd)
export(addToPathStart)
export(appendToBody)
export(barcodePattern)
export(basenameSansExt)
export(classContains)
export(coerceToList)
export(collapseToPathString)
export(compress)
export(cpus)
export(decompress)
export(dots)
export(download)
export(dupes)
export(euclidean)
export(fileDepth)
export(fileExt)
export(foldChangeToLogRatio)
export(genomeMetadataNames)
export(geometricMean)
export(gitCurrentBranch)
export(gitDefaultBranch)
export(headtail)
export(initDir)
export(intersectAll)
export(intersectionMatrix)
export(keepOnlyAtomicCols)
export(lanePattern)
export(logRatioToFoldChange)
export(majorMinorVersion)
export(majorVersion)
export(matchAll)
export(matchNested)
export(metadataDenylist)
export(methodFormals)
export(methodFunction)
export(metricsCols)
export(minorVersion)
export(notDupes)
export(parentDir)
export(parentDirectory)
export(pasteUrl)
export(pkgCacheDir)
export(printString)
export(quietly)
export(ram)
export(randomString)
export(rankedMatrix)
export(realpath)
export(removeFromPath)
export(sanitizeVersion)
export(sem)
export(shell)
export(showHeader)
export(showSlotInfo)
export(simpleClass)
export(splitPathString)
export(standardizeCall)
export(strExtract)
export(strExtractAll)
export(strMatch)
export(strMatchAll)
export(strPad)
export(strRemoveEmpty)
export(strReplaceNa)
export(strSplit)
export(tempdir2)
export(truncateString)
export(uniquePathString)
export(unlink2)
export(updateMessage)
export(zscore)
exportClasses(missingOrNULL)
exportMethods(coerceToList)
exportMethods(euclidean)
exportMethods(foldChangeToLogRatio)
exportMethods(geometricMean)
exportMethods(headtail)
exportMethods(intersectionMatrix)
exportMethods(keepOnlyAtomicCols)
exportMethods(logRatioToFoldChange)
exportMethods(matchAll)
exportMethods(matchNested)
exportMethods(rankedMatrix)
exportMethods(sem)
exportMethods(showHeader)
exportMethods(zscore)
importClassesFrom(BiocGenerics,AsIs)
importClassesFrom(S4Vectors,Annotated)
importClassesFrom(S4Vectors,DFrame)
importFrom(AcidGenerics,coerceToList)
importFrom(AcidGenerics,euclidean)
importFrom(AcidGenerics,foldChangeToLogRatio)
importFrom(AcidGenerics,geometricMean)
importFrom(AcidGenerics,headtail)
importFrom(AcidGenerics,intersectAll)
importFrom(AcidGenerics,intersectionMatrix)
importFrom(AcidGenerics,keepOnlyAtomicCols)
importFrom(AcidGenerics,logRatioToFoldChange)
importFrom(AcidGenerics,matchAll)
importFrom(AcidGenerics,matchNested)
importFrom(AcidGenerics,rankedMatrix)
importFrom(AcidGenerics,sem)
importFrom(AcidGenerics,showHeader)
importFrom(AcidGenerics,zscore)
importFrom(BiocGenerics,dims)
importFrom(BiocGenerics,do.call)
importFrom(BiocGenerics,duplicated)
importFrom(BiocGenerics,grep)
importFrom(BiocGenerics,grepl)
importFrom(BiocGenerics,match)
importFrom(BiocGenerics,unique)
importFrom(BiocGenerics,unlist)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,head)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,na.omit)
importFrom(S4Vectors,tail)
importFrom(goalie,allAreAtomic)
importFrom(goalie,allAreDirs)
importFrom(goalie,allAreMatchingFixed)
importFrom(goalie,allAreMatchingRegex)
importFrom(goalie,allHaveAccess)
importFrom(goalie,assert)
importFrom(goalie,bapply)
importFrom(goalie,compressExtPattern)
importFrom(goalie,extPattern)
importFrom(goalie,hasDims)
importFrom(goalie,hasLength)
importFrom(goalie,hasNames)
importFrom(goalie,hasNoDuplicates)
importFrom(goalie,isADir)
importFrom(goalie,isAFile)
importFrom(goalie,isAGitRepo)
importFrom(goalie,isASystemCommand)
importFrom(goalie,isAUrl)
importFrom(goalie,isAny)
importFrom(goalie,isCharacter)
importFrom(goalie,isDuplicate)
importFrom(goalie,isFlag)
importFrom(goalie,isInRange)
importFrom(goalie,isInstalled)
importFrom(goalie,isInt)
importFrom(goalie,isPositive)
importFrom(goalie,isScalar)
importFrom(goalie,isString)
importFrom(goalie,isSubset)
importFrom(goalie,isSystemCommand)
importFrom(goalie,quietly)
importFrom(goalie,requireNamespaces)
importFrom(methods,.hasSlot)
importFrom(methods,getClassDef)
importFrom(methods,is)
importFrom(methods,isGeneric)
importFrom(methods,selectMethod)
importFrom(methods,setClassUnion)
importFrom(methods,setMethod)
importFrom(methods,setOldClass)
importFrom(methods,signature)
importFrom(methods,slot)
importFrom(methods,slotNames)