Remove GFF requirement when kallisto pseudoaligner used

adamd3 · adamd3 · commit 526699d99aec · 2024-01-22T14:10:18.000-06:00
diff --git a/main.nf b/main.nf
@@ -218,8 +218,7 @@ workflow {
             ch_metadata
         )
         // ch_readcounts_df = MERGE_COUNTS.out.counts_df
-        // ch_readcounts_df_pc = MERGE_COUNTS.out.counts_df_pc
-        ch_readcounts_df_pc = MERGE_COUNTS.out.counts_df
+        ch_readcounts_df_pc = MERGE_COUNTS.out.counts_df_pc
         ch_refgene_df = MERGE_COUNTS.out.ref_gene_df
 
 

Original file line number	Diff line number	Diff line change
`@@ -218,8 +218,7 @@ workflow {`
`218`	`218`	`ch_metadata`
`219`	`219`	`)`
`220`	`220`	`// ch_readcounts_df = MERGE_COUNTS.out.counts_df`
`221`		`- // ch_readcounts_df_pc = MERGE_COUNTS.out.counts_df_pc`
`222`		`- ch_readcounts_df_pc = MERGE_COUNTS.out.counts_df`
	`221`	`+ ch_readcounts_df_pc = MERGE_COUNTS.out.counts_df_pc`
`223`	`222`	`ch_refgene_df = MERGE_COUNTS.out.ref_gene_df`
`224`	`223`
`225`	`224`