From 5f1e447d1820e906e2f54857de7d8ce73499715a Mon Sep 17 00:00:00 2001 From: Adam Dinan Date: Mon, 22 Jan 2024 13:58:14 -0600 Subject: [PATCH] Fix normalisation subsetting --- bin/normalise_counts.R | 1 + 1 file changed, 1 insertion(+) diff --git a/bin/normalise_counts.R b/bin/normalise_counts.R index f76f7c1..ebd02f7 100755 --- a/bin/normalise_counts.R +++ b/bin/normalise_counts.R @@ -44,6 +44,7 @@ rownames(counts_tab) <- gene_names # ref_tab_sub <- ref_gene_tab[!ref_gene_tab$biotype == "rRNA", ] # non_rRNA_counts <- counts_tab[rownames(counts_tab) %in% ref_tab_sub$locus_tag, ] ref_tab_sub <- ref_gene_tab +non_rRNA_counts <- counts_tab ## ensure that ref gene annotations order matches counts table ref_tab_sub <- ref_tab_sub[match(