From f3bf4f4355e35c97c8ec844d72c12dd00202d22a Mon Sep 17 00:00:00 2001
From: Adam Dinan <adam1989ie@gmail.com>
Date: Mon, 22 Jan 2024 15:44:47 -0600
Subject: [PATCH] Remove check for ref ann file as now optional

---
 bin/normalise_counts.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/bin/normalise_counts.R b/bin/normalise_counts.R
index daa10a4..f6ddf8e 100755
--- a/bin/normalise_counts.R
+++ b/bin/normalise_counts.R
@@ -36,7 +36,7 @@ outdir <- opt$outdir
 #     stringsAsFactors = FALSE
 # )
 
-counts_tab <- read_tsv("gene_counts_pc.tsv")
+counts_tab <- read_tsv("gene_counts_pc1.tsv")
 ref_gene_tab <- read_tsv("ref_gene_df.tsv")
 
 gene_names <- counts_tab[["feature_id"]]