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I'm getting error 136 which I think is when trying to execute IntervalMiss:
slurm log final lines:
/projects/Aylward_Lab/Paula/nanopore/assemblers/wengan/bin/intervalmiss -d 7 --fst 0.1 -b 2937_wengan_allruns.minia.contigs.cov.txt -t 64 -s 2937_wengan_allruns.fms.sams.txt -c 2937_wengan_allruns.minia.contigs.fa -p 2937_wengan_allruns 2>2937_wengan_allruns.im.err >2937_wengan_allruns.im.log /bin/sh: line 1: 186084 Floating point exception/projects/Aylward_Lab/Paula/nanopore/assemblers/wengan/bin/intervalmiss -d 7 --fst 0.1 -b 2937_wengan_allruns.minia.contigs.cov.txt -t 64 -s 2937_wengan_allruns.fms.sams.txt -c 2937_wengan_allruns.minia.contigs.fa -p 2937_wengan_allruns 2> 2937_wengan_allruns.im.err > 2937_wengan_allruns.im.log make: *** [2937_wengan_allruns.MBC7.msplit.fa] Error 136
im.log file:
Sorting libs by insert size: 2937_wengan_allruns1.fm.sam 0 0 -2147483648 1 Scaling std: 0 -2147483648 -214748367 Lib: 0 Number of pair-ends : 0 Number of fragments : 0 Max allowed coverage 6 AVG 3 STD 1 CTG REP 3 =========== Checking Contigs ========= Minimum Base Coverage : 7 Minimum Contig length : 500
Thank you
The text was updated successfully, but these errors were encountered:
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I'm getting error 136 which I think is when trying to execute IntervalMiss:
slurm log final lines:
/projects/Aylward_Lab/Paula/nanopore/assemblers/wengan/bin/intervalmiss -d 7 --fst 0.1 -b 2937_wengan_allruns.minia.contigs.cov.txt -t 64 -s 2937_wengan_allruns.fms.sams.txt -c 2937_wengan_allruns.minia.contigs.fa -p 2937_wengan_allruns 2>2937_wengan_allruns.im.err >2937_wengan_allruns.im.log
/bin/sh: line 1: 186084 Floating point exception/projects/Aylward_Lab/Paula/nanopore/assemblers/wengan/bin/intervalmiss -d 7 --fst 0.1 -b 2937_wengan_allruns.minia.contigs.cov.txt -t 64 -s 2937_wengan_allruns.fms.sams.txt -c 2937_wengan_allruns.minia.contigs.fa -p 2937_wengan_allruns 2> 2937_wengan_allruns.im.err > 2937_wengan_allruns.im.log
make: *** [2937_wengan_allruns.MBC7.msplit.fa] Error 136
im.log file:
Sorting libs by insert size:
2937_wengan_allruns1.fm.sam 0 0 -2147483648 1
Scaling std: 0 -2147483648 -214748367
Lib: 0
Number of pair-ends : 0
Number of fragments : 0
Max allowed coverage 6
AVG 3 STD 1 CTG REP 3
=========== Checking Contigs =========
Minimum Base Coverage : 7
Minimum Contig length : 500
Thank you
The text was updated successfully, but these errors were encountered: