diff --git a/404.html b/404.html index e022e281..07013371 100644 --- a/404.html +++ b/404.html @@ -41,7 +41,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 252e4586..4e1890a6 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html index b12f24e9..e5ae3223 100644 --- a/CONTRIBUTING.html +++ b/CONTRIBUTING.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/LICENSE-text.html b/LICENSE-text.html index 4a4ea74a..5a33f258 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/apple-touch-icon-120x120.png b/apple-touch-icon-120x120.png index d80d01e6..899a8ce0 100644 Binary files a/apple-touch-icon-120x120.png and b/apple-touch-icon-120x120.png differ diff --git a/apple-touch-icon-152x152.png b/apple-touch-icon-152x152.png index e574bb28..0fd8571b 100644 Binary files a/apple-touch-icon-152x152.png and b/apple-touch-icon-152x152.png differ diff --git a/apple-touch-icon-180x180.png b/apple-touch-icon-180x180.png index da834e55..6427fc02 100644 Binary files a/apple-touch-icon-180x180.png and b/apple-touch-icon-180x180.png differ diff --git a/apple-touch-icon-60x60.png b/apple-touch-icon-60x60.png index 0bea7b83..31e3840e 100644 Binary files a/apple-touch-icon-60x60.png and b/apple-touch-icon-60x60.png differ diff --git a/apple-touch-icon-76x76.png b/apple-touch-icon-76x76.png index fe9364c0..b0b3c12f 100644 Binary files a/apple-touch-icon-76x76.png and b/apple-touch-icon-76x76.png differ diff --git a/apple-touch-icon.png b/apple-touch-icon.png index 469a2fa0..e9a63abd 100644 Binary files a/apple-touch-icon.png and b/apple-touch-icon.png differ diff --git a/articles/bioRad.html b/articles/bioRad.html index a79543ff..35576081 100644 --- a/articles/bioRad.html +++ b/articles/bioRad.html @@ -42,7 +42,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/articles/index.html b/articles/index.html index 7007c4f8..741a7b82 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/articles/rad_aero_22.html b/articles/rad_aero_22.html index 41a97d43..af39ee34 100644 --- a/articles/rad_aero_22.html +++ b/articles/rad_aero_22.html @@ -42,7 +42,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -212,10 +212,8 @@

Overlaying radar scans on maps
 # It is often informative to plot radar data on a base layer.
-# first download the background image:
-basemap <- download_basemap(my_ppi)
-# plot the basemap:
-plot(basemap)
+# First choose a base layer from the list of rosm::osm.types()
+basemap = "osm"
 # then overlay the PPI on the basemap, restricting the color scale from -20 to 40 dBZ:
 map(my_ppi, map = basemap, param = "DBZH", zlim = c(-20, 40))
diff --git a/articles/range_correction.html b/articles/range_correction.html index 58072bfd..86d69282 100644 --- a/articles/range_correction.html +++ b/articles/range_correction.html @@ -42,7 +42,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -118,7 +118,7 @@

1 Preparations
 options("sp_evolution_status" = 2L)
 library(bioRad)
-
## Welcome to bioRad version 0.7.2
+
## Welcome to bioRad version 0.7.3
## using vol2birdR version 1.0.1 (MistNet installed)
@@ -256,21 +256,12 @@

5 Example: estimating a VID image# extract the first scan from the polar volume: my_scan <- example_pvol$scans[[1]] # project it as a PPI on the ground: -my_ppi <- project_as_ppi(my_scan, range_max = 100000)

-
## The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
-## which was just loaded, will retire in October 2023.
-## Please refer to R-spatial evolution reports for details, especially
-## https://r-spatial.org/r/2023/05/15/evolution4.html.
-## It may be desirable to make the sf package available;
-## package maintainers should consider adding sf to Suggests:.
-## The sp package is now running under evolution status 2
-##      (status 2 uses the sf package in place of rgdal)
-
-# plot it
+my_ppi <- project_as_ppi(my_scan, range_max = 100000)
+# plot it
 plot(my_ppi)

Now let’s calculate the range-corrected PPI

-
+
 # let's use a 500 metre spatial grid (res), and restrict to 100x100 km area
 my_corrected_ppi <- integrate_to_ppi(example_pvol, example_vp, res = 500, xlim = c(-100000, 100000), ylim = c(-100000, 100000))
 my_corrected_ppi

@@ -280,23 +271,34 @@ 
5 Example: estimating a VID image##         dims:  400 x 400 pixels

The range corrected PPI has four parameters: VIR, VID, R, overlap. Let’s plot the adjustment factor R:

-
+
 # plot the adjustment factor R:
 plot(my_corrected_ppi, param = "R")

 

 
Let’s also plot the vertically integrated reflectivity:

-
+
 plot(my_corrected_ppi, param = "VIR")

 

 
Or plot the vertically integrated density on a map:

-
-bm <- download_basemap(my_corrected_ppi)

-
## Downloading zoom = 8 ...

-
## ℹ Map tiles by Stamen Design, under CC BY 3.0. Data by OpenStreetMap, under ODbL.

-
-map(my_corrected_ppi, bm, param = "VIR", alpha = .5)

+
+bm <- "osm"
+map(my_corrected_ppi, map=bm, param = "VIR", alpha = .5)

 
## Warning in CPL_crs_from_input(x): GDAL Message 1: +init=epsg:XXXX syntax is
 ## deprecated. It might return a CRS with a non-EPSG compliant axis order.

+
## Zoom: 6

+
## Fetching 4 missing tiles

+
## 
+  |                                                                            
+  |                                                                      |   0%
+  |                                                                            
+  |==================                                                    |  25%
+  |                                                                            
+  |===================================                                   |  50%
+  |                                                                            
+  |====================================================                  |  75%
+  |                                                                            
+  |======================================================================| 100%

+
## ...complete!

 

 

 

@@ -313,7 +315,7 @@ 
6 Overlap between ra
 
 
We can calculate overlap between emitted radiation and the biological
 profile as follows:

-
+
 # calculate overlap between vertical profile of birds
 # and the vertical radiation profile emitted by the radar:
 bpo <- beam_profile_overlap(example_vp, get_elevation_angles(example_pvol), seq(0, 100000, 1000), quantity = "eta")
@@ -333,7 +335,7 @@ 
6 Overlap between ra
 
The range-corrected PPI also contains a field overlap,
 which contains the same metric but then calculated on the grid of the
 PPI:

-
+
 plot(my_corrected_ppi, param = "overlap")

 

 
The overlap metric might be used in the future to show only certain
diff --git a/articles/range_correction_files/figure-html/unnamed-chunk-13-1.png b/articles/range_correction_files/figure-html/unnamed-chunk-13-1.png
index 9bda105d..377e3e05 100644
Binary files a/articles/range_correction_files/figure-html/unnamed-chunk-13-1.png and b/articles/range_correction_files/figure-html/unnamed-chunk-13-1.png differ
diff --git a/authors.html b/authors.html
index 336a7a72..3ba22c41 100644
--- a/authors.html
+++ b/authors.html
@@ -17,7 +17,7 @@
       
       
         bioRad
-        0.7.2
+        0.7.3
       
     

 
diff --git a/favicon-16x16.png b/favicon-16x16.png
index 90616acd..493131ab 100644
Binary files a/favicon-16x16.png and b/favicon-16x16.png differ
diff --git a/favicon-32x32.png b/favicon-32x32.png
index 072f3f2a..c8459da4 100644
Binary files a/favicon-32x32.png and b/favicon-32x32.png differ
diff --git a/index.html b/index.html
index 2011efec..80df12df 100644
--- a/index.html
+++ b/index.html
@@ -45,7 +45,7 @@
       
       
         bioRad
-        0.7.2
+        0.7.3
       
     

 
@@ -176,7 +176,7 @@ 
Install bioRadThen load the package with:

 
 library(bioRad)
-#> Welcome to bioRad version 0.7.2
+#> Welcome to bioRad version 0.7.3
 #> using vol2birdR version 1.0.1 (MistNet installed)

 

 

diff --git a/news/index.html b/news/index.html
index 7795b62c..762b0994 100644
--- a/news/index.html
+++ b/news/index.html
@@ -17,7 +17,7 @@
       
       
         bioRad
-        0.7.2
+        0.7.3
       
     

 
@@ -68,6 +68,23 @@ 
Changelog 

       Source: NEWS.md
     

 
+    

+
bioRad 0.7.32023-10-20

+

+
New features

+
  • Replaced the ggmap package with ggspatial for map visualizations. This change was made as ggmap no longer provides reliable open-source basemaps without the necessity to register for an API key (#638).
    • 
+

+

+
Bugfixes

+
  • Corrected incorrect mapping of to dbz_all data column in VPTS CSV format to corresponding DBZH data column in bioRad vpts object (#634).
    • 
+
  • Improved the VPTS file fetching mechanism from s3: now skips a day if there are issues with fetching instead of aborting the entire download (#636)
    • 
+

+

+
Deprecations

+

+

     

 
bioRad 0.7.22023-09-06

 

@@ -226,7 +243,7 @@ 
Additional featuresbioRad 0.4.02018-12-14

 
First release on CRAN! All issues included in this release can be found here.

 
  • get_param() added as new function to get parameters from scan (#132).
    • 
-
  • download_basemap() now uses Stamen basemaps by default (parameter source), so users do not need to request an API key for the previous default Google Maps (#163).
    • 
+
  • download_basemap() now uses Stamen basemaps by default (parameter source), so users do not need to request an API key for the previous default Google Maps (#163).
    • 
 
  • download_vpfiles() and select_vpfiles() now use 5 letter radar codes (parameter radars instead of radar and country), allow to skip already downloaded files (parameter overwrite = TRUE) and have improved download and error messages (#176).
    • 
 
  • read_pvolfile(), nexrad_to_odim() and calculate_vp() (all Docker dependent) can now read files from directories containing a space (#162).
    • 
 
  • Details for deprecated functions mt(), mtr(), cmt() are now displayed with function (#166).
    • 
diff --git a/pkgdown.yml b/pkgdown.yml
index bcac2ecd..18536bcd 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -5,7 +5,7 @@ articles:
   bioRad: bioRad.html
   rad_aero_22: rad_aero_22.html
   range_correction: range_correction.html
-last_built: 2023-09-27T14:18Z
+last_built: 2023-10-20T13:58Z
 urls:
   reference: https://adriaandokter.com/bioRad/reference
   article: https://adriaandokter.com/bioRad/articles
diff --git a/reference/Ops.html b/reference/Ops.html
index 8dce6a10..24a7e889 100644
--- a/reference/Ops.html
+++ b/reference/Ops.html
@@ -17,7 +17,7 @@
       
       
         bioRad
-        0.7.2
+        0.7.3
       
     

 
diff --git a/reference/add_expected_eta_to_scan.html b/reference/add_expected_eta_to_scan.html
index 70c29535..15058ec4 100644
--- a/reference/add_expected_eta_to_scan.html
+++ b/reference/add_expected_eta_to_scan.html
@@ -17,7 +17,7 @@
       
       
         bioRad
-        0.7.2
+        0.7.3
       
     

 
diff --git a/reference/apply_mistnet.html b/reference/apply_mistnet.html
index b26fdd41..21c0cdec 100644
--- a/reference/apply_mistnet.html
+++ b/reference/apply_mistnet.html
@@ -18,7 +18,7 @@
       
       
         bioRad
-        0.7.2
+        0.7.3
@@ -210,7 +210,7 @@

Examples

# Calculate MistNet segmentation mistnet_pvol <- apply_mistnet(tempfile) -#> Filename = /tmp/RtmpgYyHQx/KBGM_example1bdfdca9a32, callid = KBGM +#> Filename = /tmp/RtmpO2zEgh/KBGM_example1c1d1fa76dbd, callid = KBGM #> Reading RSL polar volume with nominal time 20191001-000542, source: RAD:KBGM,PLC:BINGHAMTON,state:NY,radar_name:KBGM #> Running vol2birdSetUp #> Warning: radial velocities will be dealiased... @@ -235,14 +235,6 @@

Examples

# Project the scan as a ppi ppi <- project_as_ppi(scan, range_max = 100000) -#> The legacy packages maptools, rgdal, and rgeos, underpinning the sp package, -#> which was just loaded, will retire in October 2023. -#> Please refer to R-spatial evolution reports for details, especially -#> https://r-spatial.org/r/2023/05/15/evolution4.html. -#> It may be desirable to make the sf package available; -#> package maintainers should consider adding sf to Suggests:. -#> The sp package is now running under evolution status 2 -#> (status 2 uses the sf package in place of rgdal) # Plot the reflectivity parameter plot(ppi, param = "DBZH") diff --git a/reference/as.data.frame.vp.html b/reference/as.data.frame.vp.html index 37f3f453..94acfe6d 100644 --- a/reference/as.data.frame.vp.html +++ b/reference/as.data.frame.vp.html @@ -22,7 +22,7 @@ bioRad - 0.7.2 + 0.7.3
diff --git a/reference/as.vpts.html b/reference/as.vpts.html index 4f8bb46c..49c16280 100644 --- a/reference/as.vpts.html +++ b/reference/as.vpts.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/attribute_table.html b/reference/attribute_table.html index 7424f8dc..c0fc9358 100644 --- a/reference/attribute_table.html +++ b/reference/attribute_table.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/beam_distance.html b/reference/beam_distance.html index 17f513f9..c161e6cb 100644 --- a/reference/beam_distance.html +++ b/reference/beam_distance.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/beam_height.html b/reference/beam_height.html index bd3ad120..b714d130 100644 --- a/reference/beam_height.html +++ b/reference/beam_height.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/beam_profile.html b/reference/beam_profile.html index 4d2df1f2..b991971a 100644 --- a/reference/beam_profile.html +++ b/reference/beam_profile.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/beam_profile_overlap.html b/reference/beam_profile_overlap.html index 19098b14..8b748518 100644 --- a/reference/beam_profile_overlap.html +++ b/reference/beam_profile_overlap.html @@ -21,7 +21,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/beam_range.html b/reference/beam_range.html index cd3e492e..ba83b89d 100644 --- a/reference/beam_range.html +++ b/reference/beam_range.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/beam_width.html b/reference/beam_width.html index 89a464e5..6dcbb38b 100644 --- a/reference/beam_width.html +++ b/reference/beam_width.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/bind_into_vpts.html b/reference/bind_into_vpts.html index e3a677d5..7331ab25 100644 --- a/reference/bind_into_vpts.html +++ b/reference/bind_into_vpts.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/bioRad-deprecated.html b/reference/bioRad-deprecated.html index bdf97620..0073ad19 100644 --- a/reference/bioRad-deprecated.html +++ b/reference/bioRad-deprecated.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -82,7 +82,9 @@

Deprecated bioRad functions and data

update_docker(...) -vol2bird_version(...) +vol2bird_version(...) + +download_basemap(...)
@@ -99,6 +101,8 @@

Value

an object of class numeric_version

+ +

No return value, called for warning message side effect only

check_docker

@@ -118,6 +122,13 @@

vol2bird_version

This function has been moved to package vol2birdR

+
+

download_basemap

+ + +

This function has been deprecated +ggmap has been replaced by ggspatial which no longer requires a pre-downloaded raster basemap

+
diff --git a/reference/c.vp.html b/reference/c.vp.html index 21893a58..6aa421b2 100644 --- a/reference/c.vp.html +++ b/reference/c.vp.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/calculate_param.html b/reference/calculate_param.html index 52af4719..f89bac17 100644 --- a/reference/calculate_param.html +++ b/reference/calculate_param.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/calculate_vp.html b/reference/calculate_vp.html index c9fbf98b..e6628d51 100644 --- a/reference/calculate_vp.html +++ b/reference/calculate_vp.html @@ -21,7 +21,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/check_date_format.html b/reference/check_date_format.html index 7328f676..009ce737 100644 --- a/reference/check_date_format.html +++ b/reference/check_date_format.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/check_night.html b/reference/check_night.html index 2b75ba7b..5116a08a 100644 --- a/reference/check_night.html +++ b/reference/check_night.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/check_radar_codes.html b/reference/check_radar_codes.html index afc1add5..07f119e9 100644 --- a/reference/check_radar_codes.html +++ b/reference/check_radar_codes.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/composite_ppi-1.png b/reference/composite_ppi-1.png index e0ab4deb..ac7659a2 100644 Binary files a/reference/composite_ppi-1.png and b/reference/composite_ppi-1.png differ diff --git a/reference/composite_ppi.html b/reference/composite_ppi.html index 05c825d4..2a4b349c 100644 --- a/reference/composite_ppi.html +++ b/reference/composite_ppi.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -213,14 +213,13 @@

Examples

# across the available scans at each geographic location composite <- composite_ppi(ppis, method = "max", res=1000) -# Download basemap -bm <- download_basemap(composite) -#> Downloading zoom = 9 ... -#> ℹ Map tiles by Stamen Design, under CC BY 3.0. Data by OpenStreetMap, under ODbL. - # Plot the calculated max product on the basemap -map(composite, bm) +map(composite) #> Warning: GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. +#> Zoom: 8 +#> Fetching 4 missing tiles +#> | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% +#> ...complete! # } diff --git a/reference/convert_legacy.html b/reference/convert_legacy.html index 1efc9ec9..6ea813a0 100644 --- a/reference/convert_legacy.html +++ b/reference/convert_legacy.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/dbz_to_eta.html b/reference/dbz_to_eta.html index e1bc2175..df7573e3 100644 --- a/reference/dbz_to_eta.html +++ b/reference/dbz_to_eta.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/download_pvolfiles.html b/reference/download_pvolfiles.html index 9a59b4b4..a914c391 100644 --- a/reference/download_pvolfiles.html +++ b/reference/download_pvolfiles.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/download_vpfiles.html b/reference/download_vpfiles.html index 74b1f126..59f836c5 100644 --- a/reference/download_vpfiles.html +++ b/reference/download_vpfiles.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/doy_noy.html b/reference/doy_noy.html index a0b7e4be..e3b083a6 100644 --- a/reference/doy_noy.html +++ b/reference/doy_noy.html @@ -21,7 +21,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -130,7 +130,7 @@

Arguments

method

Method by which to do the time zone lookup. Either fast -(default) or accurate. See lutz::tz_lookup_coords].

+(default) or accurate. See lutz::tz_lookup_coords].

lon
diff --git a/reference/eta_to_dbz.html b/reference/eta_to_dbz.html index aaae31b6..412292cb 100644 --- a/reference/eta_to_dbz.html +++ b/reference/eta_to_dbz.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/example_scan.html b/reference/example_scan.html index 5ca1ade0..0b3d6b57 100644 --- a/reference/example_scan.html +++ b/reference/example_scan.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/example_vp.html b/reference/example_vp.html index 4ccde1b1..06c6cf9a 100644 --- a/reference/example_vp.html +++ b/reference/example_vp.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/example_vpts.html b/reference/example_vpts.html index 6a6bc44a..bf9ad382 100644 --- a/reference/example_vpts.html +++ b/reference/example_vpts.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/extract_string.html b/reference/extract_string.html index 17cb94d4..3f6b0ee9 100644 --- a/reference/extract_string.html +++ b/reference/extract_string.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/filter_vpts.html b/reference/filter_vpts.html index c5c3aab8..faa0f409 100644 --- a/reference/filter_vpts.html +++ b/reference/filter_vpts.html @@ -26,7 +26,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/gaussian_beam_profile.html b/reference/gaussian_beam_profile.html index 93cdbee1..53d08d3d 100644 --- a/reference/gaussian_beam_profile.html +++ b/reference/gaussian_beam_profile.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/get_elevation_angles.html b/reference/get_elevation_angles.html index e8e67523..a6f42480 100644 --- a/reference/get_elevation_angles.html +++ b/reference/get_elevation_angles.html @@ -21,7 +21,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/get_iris_raw_task.html b/reference/get_iris_raw_task.html index 966a4a4c..a417f5df 100644 --- a/reference/get_iris_raw_task.html +++ b/reference/get_iris_raw_task.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/get_odim_object_type.html b/reference/get_odim_object_type.html index 87658c6e..8841b270 100644 --- a/reference/get_odim_object_type.html +++ b/reference/get_odim_object_type.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/get_param.html b/reference/get_param.html index 83cfe003..cbd88cb0 100644 --- a/reference/get_param.html +++ b/reference/get_param.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/get_quantity.html b/reference/get_quantity.html index 2703f84e..ea8027aa 100644 --- a/reference/get_quantity.html +++ b/reference/get_quantity.html @@ -23,7 +23,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/get_scan.html b/reference/get_scan.html index 0dbc05ac..633fbd11 100644 --- a/reference/get_scan.html +++ b/reference/get_scan.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/index.html b/reference/index.html index e361f1d9..ef88e4a3 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -192,9 +192,9 @@

Plotting radar scans download_basemap()

+

check_docker() update_docker() vol2bird_version() download_basemap()

-

Download a basemap for map(ppi)

+

Deprecated bioRad functions and data

composite_ppi()

diff --git a/reference/integrate_profile.html b/reference/integrate_profile.html index e60d0022..999e1191 100644 --- a/reference/integrate_profile.html +++ b/reference/integrate_profile.html @@ -21,7 +21,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/integrate_to_ppi-3.png b/reference/integrate_to_ppi-3.png index 0f4b3eaf..69e89b9d 100644 Binary files a/reference/integrate_to_ppi-3.png and b/reference/integrate_to_ppi-3.png differ diff --git a/reference/integrate_to_ppi.html b/reference/integrate_to_ppi.html index 4c91a5e6..2539d2af 100644 --- a/reference/integrate_to_ppi.html +++ b/reference/integrate_to_ppi.html @@ -26,7 +26,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -307,10 +307,11 @@

Examples

# Download a basemap and map the ppi -bm <- download_basemap(ppi) -#> Downloading zoom = 7 ... -#> ℹ Map tiles by Stamen Design, under CC BY 3.0. Data by OpenStreetMap, under ODbL. -map(ppi, bm) +map(ppi) +#> Zoom: 5 +#> Fetching 4 missing tiles +#> | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% +#> ...complete! # The ppi can also be projected on a user-defined raster, as follows: diff --git a/reference/is.nan.data.frame.html b/reference/is.nan.data.frame.html index 6171056d..10af46a4 100644 --- a/reference/is.nan.data.frame.html +++ b/reference/is.nan.data.frame.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/is.pvolfile.html b/reference/is.pvolfile.html index 3cb66a0c..e9fc2cb9 100644 --- a/reference/is.pvolfile.html +++ b/reference/is.pvolfile.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/is.vpfile.html b/reference/is.vpfile.html index 3178fb8e..5fe9112b 100644 --- a/reference/is.vpfile.html +++ b/reference/is.vpfile.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/list_vpts_aloft.html b/reference/list_vpts_aloft.html index af9f190e..83dfe428 100644 --- a/reference/list_vpts_aloft.html +++ b/reference/list_vpts_aloft.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -129,7 +129,7 @@

Value

Examples

list_vpts_aloft(radars = "bejab")
-#> Warning: Radar data found between 2023-02 and 2023-09 but not every date has radar data
+#> Warning: Radar data found between 2023-02 and 2023-10 but not every date has radar data
 #> https://aloftdata.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202302.csv.gz
 #> https://aloftdata.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202303.csv.gz
 #> https://aloftdata.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202304.csv.gz
@@ -138,6 +138,7 @@ 
Examples

 #> https://aloftdata.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202307.csv.gz
 #> https://aloftdata.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202308.csv.gz
 #> https://aloftdata.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202309.csv.gz
+#> https://aloftdata.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202310.csv.gz
diff --git a/reference/map-1.png b/reference/map-1.png index 73f8e9fc..96ffc9c6 100644 Binary files a/reference/map-1.png and b/reference/map-1.png differ diff --git a/reference/map-2.png b/reference/map-2.png index 0435bf45..a2ba18e9 100644 Binary files a/reference/map-2.png and b/reference/map-2.png differ diff --git a/reference/map-3.png b/reference/map-3.png index 7b3a69e5..2d0d0694 100644 Binary files a/reference/map-3.png and b/reference/map-3.png differ diff --git a/reference/map-4.png b/reference/map-4.png index 8ce4c3fe..4303bbff 100644 Binary files a/reference/map-4.png and b/reference/map-4.png differ diff --git a/reference/map-5.png b/reference/map-5.png index 449c073b..5f4c3dd5 100644 Binary files a/reference/map-5.png and b/reference/map-5.png differ diff --git a/reference/map-6.png b/reference/map-6.png index 2ab6bbda..a87bd3cd 100644 Binary files a/reference/map-6.png and b/reference/map-6.png differ diff --git a/reference/map-7.png b/reference/map-7.png index 097617e0..2d0d0694 100644 Binary files a/reference/map-7.png and b/reference/map-7.png differ diff --git a/reference/map.html b/reference/map.html index c84c6c8b..5dbbf948 100644 --- a/reference/map.html +++ b/reference/map.html @@ -1,6 +1,5 @@ -Map a plan position indicator (ppi) on a map — map • bioRadMap a plan position indicator (ppi) on a map — map • bioRad @@ -18,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -71,8 +70,7 @@

Map a plan position indicator (ppi) on a map

-

Plots a plan position indicator (ppi) on a base layer using -ggmap::ggmap().

+

Plots a plan position indicator (ppi) on a base layer

@@ -81,7 +79,7 @@

Map a plan position indicator (ppi) on a map

# S3 method for ppi map( x, - map, + map = "cartolight", param, alpha = 0.7, xlim, @@ -89,7 +87,7 @@

Map a plan position indicator (ppi) on a map

zlim = c(-20, 20), ratio, radar_size = 3, - radar_color = "red", + radar_color = "#202020", n_color = 1000, palette = NA, ... @@ -103,11 +101,11 @@

Arguments

...
-

Arguments passed to ggmap::ggmap().

+

Arguments passed to ggplot2::ggplot().

map
-

Basemap to use, result of a call to download_basemap().

+

Basemap to use, one of rosm::osm.types()

param
@@ -160,8 +158,7 @@

Arguments

Value

-

A ggmap object (a classed raster object with a bounding -box attribute).

+

A ggplot object

Details

@@ -186,8 +183,7 @@

Methods (by class)

See also

-
@@ -196,38 +192,45 @@

Examples

# Project a scan as a ppi
 ppi <- project_as_ppi(example_scan)
 # \donttest{
-# Create a basemap that matches the extent of the ppi
-basemap <- download_basemap(ppi, maptype = "toner-lite")
-#> Downloading zoom = 9 ...
-#> ℹ Map tiles by Stamen Design, under CC BY 3.0. Data by OpenStreetMap, under ODbL.
+# Choose a basemap
+basemap <- rosm::osm.types()[1]
 
 # Map the radial velocity of the ppi onto the basemap
 map(ppi, map = basemap, param = "VRADH")
+#> Zoom: 8
+#> Fetching 4 missing tiles
+#> 
  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |==================                                                    |  25%
  |                                                                            
  |===================================                                   |  50%
  |                                                                            
  |====================================================                  |  75%
  |                                                                            
  |======================================================================| 100%
+#> ...complete!
 
 
 # Extend the plotting range of velocities, from -50 to 50 m/s
 map(ppi, map = basemap, param = "VRADH", zlim = c(-50, 50))
+#> Zoom: 8
 
 
 # Map the reflectivity
 map(ppi, map = basemap, param = "DBZH")
+#> Zoom: 8
 
 
 # Change the color palette to Viridis colors
 map(ppi, map = basemap, param = "DBZH", palette = viridis::viridis(100), zlim=c(-10,10))
+#> Zoom: 8
 
 
 # Give the data more transparency
 map(ppi, map = basemap, param = "DBZH", alpha = 0.3)
+#> Zoom: 8
 
 
 # Change the appearance of the symbol indicating the radar location
 map(ppi, map = basemap, radar_size = 5, radar_color = "blue")
+#> Zoom: 8
 
 
 # Crop the map
 map(ppi, map = basemap, xlim = c(12.4, 13.2), ylim = c(56, 56.5))
-#> Warning: Removed 1 rows containing missing values (`geom_rect()`).
+#> Zoom: 8
 
 # }
diff --git a/reference/match_filenames.html b/reference/match_filenames.html index 256c2981..43e242c1 100644 --- a/reference/match_filenames.html +++ b/reference/match_filenames.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3
diff --git a/reference/nexrad_to_odim.html b/reference/nexrad_to_odim.html index 38f73852..4dc88a00 100644 --- a/reference/nexrad_to_odim.html +++ b/reference/nexrad_to_odim.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 @@ -121,7 +121,7 @@

Examples

new_path = file.path(tempdir(), "KBGM_example.h5") nexrad_to_odim(path, new_path) -#> Filename = /tmp/RtmpgYyHQx/KBGM_example, callid = KBGM +#> Filename = /tmp/RtmpO2zEgh/KBGM_example, callid = KBGM #> Reading RSL polar volume with nominal time 20191001-000542, source: RAD:KBGM,PLC:BINGHAMTON,state:NY,radar_name:KBGM # verify that we have generated a polar volume in ODIM HDF5 format diff --git a/reference/nyquist_velocity.html b/reference/nyquist_velocity.html index 91cd86db..23fcf277 100644 --- a/reference/nyquist_velocity.html +++ b/reference/nyquist_velocity.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/plot.ppi.html b/reference/plot.ppi.html index 898c673c..9ec47a29 100644 --- a/reference/plot.ppi.html +++ b/reference/plot.ppi.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/plot.scan.html b/reference/plot.scan.html index 60b0c1a8..6a60fdc8 100644 --- a/reference/plot.scan.html +++ b/reference/plot.scan.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/plot.vp.html b/reference/plot.vp.html index 951f88d0..6ae35592 100644 --- a/reference/plot.vp.html +++ b/reference/plot.vp.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/plot.vpi.html b/reference/plot.vpi.html index 9ae09808..3f5c909d 100644 --- a/reference/plot.vpi.html +++ b/reference/plot.vpi.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/plot.vpts.html b/reference/plot.vpts.html index c1f27f26..9228f8c1 100644 --- a/reference/plot.vpts.html +++ b/reference/plot.vpts.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/proj_to_wgs.html b/reference/proj_to_wgs.html index feb37e27..5f13f077 100644 --- a/reference/proj_to_wgs.html +++ b/reference/proj_to_wgs.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/project_as_ppi.html b/reference/project_as_ppi.html index fbd230b1..77ec4d5b 100644 --- a/reference/project_as_ppi.html +++ b/reference/project_as_ppi.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/rcs-set.html b/reference/rcs-set.html index 12024454..5681e2fe 100644 --- a/reference/rcs-set.html +++ b/reference/rcs-set.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/rcs.html b/reference/rcs.html index 1fcb0161..a0e6f875 100644 --- a/reference/rcs.html +++ b/reference/rcs.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/read_cajun.html b/reference/read_cajun.html index c68643fc..6b770b8e 100644 --- a/reference/read_cajun.html +++ b/reference/read_cajun.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/read_pvolfile.html b/reference/read_pvolfile.html index 600a2887..d6a848cc 100644 --- a/reference/read_pvolfile.html +++ b/reference/read_pvolfile.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/read_stdout.html b/reference/read_stdout.html index 365a4106..2a46505b 100644 --- a/reference/read_stdout.html +++ b/reference/read_stdout.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/read_vp.html b/reference/read_vp.html index e2bc2d26..e389bba8 100644 --- a/reference/read_vp.html +++ b/reference/read_vp.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/read_vpfiles.html b/reference/read_vpfiles.html index ae9095fa..e2539637 100644 --- a/reference/read_vpfiles.html +++ b/reference/read_vpfiles.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/read_vpts.html b/reference/read_vpts.html index c0a4a6eb..bda1e90a 100644 --- a/reference/read_vpts.html +++ b/reference/read_vpts.html @@ -23,7 +23,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/regularize_vpts.html b/reference/regularize_vpts.html index 8e3889b6..91ff73e3 100644 --- a/reference/regularize_vpts.html +++ b/reference/regularize_vpts.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/rosm.cache/cartolight/5_16_10.png b/reference/rosm.cache/cartolight/5_16_10.png new file mode 100644 index 00000000..8bd39c76 Binary files /dev/null and b/reference/rosm.cache/cartolight/5_16_10.png differ diff --git a/reference/rosm.cache/cartolight/5_16_9.png b/reference/rosm.cache/cartolight/5_16_9.png new file mode 100644 index 00000000..51be8db7 Binary files /dev/null and b/reference/rosm.cache/cartolight/5_16_9.png differ diff --git a/reference/rosm.cache/cartolight/5_17_10.png b/reference/rosm.cache/cartolight/5_17_10.png new file mode 100644 index 00000000..6bf69e42 Binary files /dev/null and b/reference/rosm.cache/cartolight/5_17_10.png differ diff --git a/reference/rosm.cache/cartolight/5_17_9.png b/reference/rosm.cache/cartolight/5_17_9.png new file mode 100644 index 00000000..08841a0a Binary files /dev/null and b/reference/rosm.cache/cartolight/5_17_9.png differ diff --git a/reference/rosm.cache/cartolight/8_136_78.png b/reference/rosm.cache/cartolight/8_136_78.png new file mode 100644 index 00000000..8fd3f463 Binary files /dev/null and b/reference/rosm.cache/cartolight/8_136_78.png differ diff --git a/reference/rosm.cache/cartolight/8_136_79.png b/reference/rosm.cache/cartolight/8_136_79.png new file mode 100644 index 00000000..5dcb17e1 Binary files /dev/null and b/reference/rosm.cache/cartolight/8_136_79.png differ diff --git a/reference/rosm.cache/cartolight/8_137_78.png b/reference/rosm.cache/cartolight/8_137_78.png new file mode 100644 index 00000000..3184033a Binary files /dev/null and b/reference/rosm.cache/cartolight/8_137_78.png differ diff --git a/reference/rosm.cache/cartolight/8_137_79.png b/reference/rosm.cache/cartolight/8_137_79.png new file mode 100644 index 00000000..e7e4ee68 Binary files /dev/null and b/reference/rosm.cache/cartolight/8_137_79.png differ diff --git a/reference/rosm.cache/osm/8_136_78.png b/reference/rosm.cache/osm/8_136_78.png new file mode 100644 index 00000000..599310b6 Binary files /dev/null and b/reference/rosm.cache/osm/8_136_78.png differ diff --git a/reference/rosm.cache/osm/8_136_79.png b/reference/rosm.cache/osm/8_136_79.png new file mode 100644 index 00000000..ad4695b6 Binary files /dev/null and b/reference/rosm.cache/osm/8_136_79.png differ diff --git a/reference/rosm.cache/osm/8_137_78.png b/reference/rosm.cache/osm/8_137_78.png new file mode 100644 index 00000000..e252acdb Binary files /dev/null and b/reference/rosm.cache/osm/8_137_78.png differ diff --git a/reference/rosm.cache/osm/8_137_79.png b/reference/rosm.cache/osm/8_137_79.png new file mode 100644 index 00000000..fa0ddc45 Binary files /dev/null and b/reference/rosm.cache/osm/8_137_79.png differ diff --git a/reference/scan_to_raster.html b/reference/scan_to_raster.html index 398b2020..344c5fd6 100644 --- a/reference/scan_to_raster.html +++ b/reference/scan_to_raster.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/scan_to_spatial.html b/reference/scan_to_spatial.html index ee8c8a67..b2f99c46 100644 --- a/reference/scan_to_spatial.html +++ b/reference/scan_to_spatial.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/sd_vvp_threshold-set.html b/reference/sd_vvp_threshold-set.html index 687cb8b2..e4434ce6 100644 --- a/reference/sd_vvp_threshold-set.html +++ b/reference/sd_vvp_threshold-set.html @@ -21,7 +21,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/sd_vvp_threshold.html b/reference/sd_vvp_threshold.html index 499febda..fbdcf383 100644 --- a/reference/sd_vvp_threshold.html +++ b/reference/sd_vvp_threshold.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/select_vpfiles.html b/reference/select_vpfiles.html index 60a38edc..72c7ca7b 100644 --- a/reference/select_vpfiles.html +++ b/reference/select_vpfiles.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/skip_if_no_mistnet.html b/reference/skip_if_no_mistnet.html index d8f18bf2..345003c3 100644 --- a/reference/skip_if_no_mistnet.html +++ b/reference/skip_if_no_mistnet.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/skip_if_no_vol2birdR.html b/reference/skip_if_no_vol2birdR.html index 549a4b5b..b05230cb 100644 --- a/reference/skip_if_no_vol2birdR.html +++ b/reference/skip_if_no_vol2birdR.html @@ -19,7 +19,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/sub-.ppi.html b/reference/sub-.ppi.html index a91eba9e..a79decd4 100644 --- a/reference/sub-.ppi.html +++ b/reference/sub-.ppi.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/summary.param.html b/reference/summary.param.html index 6d7cbeba..d7622089 100644 --- a/reference/summary.param.html +++ b/reference/summary.param.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/summary.ppi.html b/reference/summary.ppi.html index f59c2ac3..79febf0f 100644 --- a/reference/summary.ppi.html +++ b/reference/summary.ppi.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/summary.pvol.html b/reference/summary.pvol.html index 3fe769b1..feeb3e75 100644 --- a/reference/summary.pvol.html +++ b/reference/summary.pvol.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/summary.scan.html b/reference/summary.scan.html index f5b3a501..aff08d80 100644 --- a/reference/summary.scan.html +++ b/reference/summary.scan.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/summary.vp.html b/reference/summary.vp.html index e4145ad9..a454b945 100644 --- a/reference/summary.vp.html +++ b/reference/summary.vp.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/summary.vpi.html b/reference/summary.vpi.html index 451f9d15..7bdcb467 100644 --- a/reference/summary.vpi.html +++ b/reference/summary.vpi.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/summary.vpts.html b/reference/summary.vpts.html index 26c0cfb3..16cb0e3b 100644 --- a/reference/summary.vpts.html +++ b/reference/summary.vpts.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/sunrise_sunset.html b/reference/sunrise_sunset.html index c5733d08..963433ac 100644 --- a/reference/sunrise_sunset.html +++ b/reference/sunrise_sunset.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/vplist_to_vpts.html b/reference/vplist_to_vpts.html index 957bc7c7..c1274d69 100644 --- a/reference/vplist_to_vpts.html +++ b/reference/vplist_to_vpts.html @@ -18,7 +18,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/wgs_to_proj.html b/reference/wgs_to_proj.html index 4a35c233..64fdeece 100644 --- a/reference/wgs_to_proj.html +++ b/reference/wgs_to_proj.html @@ -20,7 +20,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/reference/write_pvolfile.html b/reference/write_pvolfile.html index 3d3a40c2..782e47c5 100644 --- a/reference/write_pvolfile.html +++ b/reference/write_pvolfile.html @@ -17,7 +17,7 @@ bioRad - 0.7.2 + 0.7.3 diff --git a/sitemap.xml b/sitemap.xml index c6ce0068..60719603 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -105,9 +105,6 @@ https://adriaandokter.com/bioRad/reference/dbz_to_eta.html - - https://adriaandokter.com/bioRad/reference/download_basemap.html - https://adriaandokter.com/bioRad/reference/download_pvolfiles.html