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requirements.txt
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requirements.txt
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absl-py==2.1.0
aiohttp==3.9.5
aiosignal==1.3.1
annotated-types==0.7.0
anyio @ file:///home/conda/feedstock_root/build_artifacts/anyio_1717693030552/work
appnope @ file:///home/conda/feedstock_root/build_artifacts/appnope_1707233003401/work
argon2-cffi @ file:///home/conda/feedstock_root/build_artifacts/argon2-cffi_1692818318753/work
argon2-cffi-bindings @ file:///Users/runner/miniforge3/conda-bld/argon2-cffi-bindings_1695386746518/work
arrow @ file:///home/conda/feedstock_root/build_artifacts/arrow_1696128962909/work
asttokens @ file:///home/conda/feedstock_root/build_artifacts/asttokens_1698341106958/work
async-lru @ file:///home/conda/feedstock_root/build_artifacts/async-lru_1690563019058/work
attrs @ file:///home/conda/feedstock_root/build_artifacts/attrs_1704011227531/work
Babel @ file:///home/conda/feedstock_root/build_artifacts/babel_1702422572539/work
beautifulsoup4 @ file:///home/conda/feedstock_root/build_artifacts/beautifulsoup4_1705564648255/work
biopython==1.81
black==23.1.0
bleach @ file:///home/conda/feedstock_root/build_artifacts/bleach_1696630167146/work
blinker==1.8.2
bokeh==3.5.2
boto3==1.34.136
botocore==1.34.162
Brotli @ file:///Users/runner/miniforge3/conda-bld/brotli-split_1695989934239/work
cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work
certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1725278078093/work/certifi
cffi @ file:///Users/runner/miniforge3/conda-bld/cffi_1696001825047/work
chardet==5.2.0
charset-normalizer @ file:///home/conda/feedstock_root/build_artifacts/charset-normalizer_1698833585322/work
click==8.1.7
cloudpickle==3.0.0
cogent3==2024.7.19a5
comm @ file:///home/conda/feedstock_root/build_artifacts/comm_1710320294760/work
contourpy==1.2.1
cycler==0.12.1
dask==2024.8.1
dask-expr==1.1.11
dataclasses-json==0.6.7
debugpy @ file:///Users/runner/miniforge3/conda-bld/debugpy_1719378686319/work
decorator @ file:///home/conda/feedstock_root/build_artifacts/decorator_1641555617451/work
defusedxml @ file:///home/conda/feedstock_root/build_artifacts/defusedxml_1615232257335/work
distributed==2024.8.1
distro==1.9.0
docarray==0.40.0
entrypoints @ file:///home/conda/feedstock_root/build_artifacts/entrypoints_1643888246732/work
et-xmlfile==1.1.0
exceptiongroup @ file:///home/conda/feedstock_root/build_artifacts/exceptiongroup_1720869315914/work
executing @ file:///home/conda/feedstock_root/build_artifacts/executing_1698579936712/work
fastjsonschema @ file:///home/conda/feedstock_root/build_artifacts/python-fastjsonschema_1718477020893/work/dist
Flask==3.0.3
fonttools==4.53.1
fqdn @ file:///home/conda/feedstock_root/build_artifacts/fqdn_1638810296540/work/dist
frozenlist==1.4.1
fsspec==2024.6.1
h11 @ file:///home/conda/feedstock_root/build_artifacts/h11_1664132893548/work
h2 @ file:///home/conda/feedstock_root/build_artifacts/h2_1634280454336/work
hpack==4.0.0
httpcore @ file:///home/conda/feedstock_root/build_artifacts/httpcore_1711596990900/work
httpx @ file:///home/conda/feedstock_root/build_artifacts/httpx_1708530890843/work
hyperframe @ file:///home/conda/feedstock_root/build_artifacts/hyperframe_1619110129307/work
idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1713279365350/work
importlib_metadata @ file:///home/conda/feedstock_root/build_artifacts/importlib-metadata_1719361860083/work
importlib_resources @ file:///home/conda/feedstock_root/build_artifacts/importlib_resources_1711040877059/work
iniconfig==2.0.0
ipykernel @ file:///Users/runner/miniforge3/conda-bld/ipykernel_1719845458456/work
ipython @ file:///home/conda/feedstock_root/build_artifacts/ipython_1719582526268/work
isoduration @ file:///home/conda/feedstock_root/build_artifacts/isoduration_1638811571363/work/dist
isort==5.13.2
itsdangerous==2.2.0
jedi @ file:///home/conda/feedstock_root/build_artifacts/jedi_1696326070614/work
Jinja2 @ file:///home/conda/feedstock_root/build_artifacts/jinja2_1715127149914/work
jiter==0.6.1
jmespath==1.0.1
joblib==1.4.2
json5 @ file:///home/conda/feedstock_root/build_artifacts/json5_1712986206667/work
jsonpatch==1.33
jsonpointer @ file:///Users/runner/miniforge3/conda-bld/jsonpointer_1718283424058/work
jsons==1.6.3
jsonschema==4.18.0
jsonschema-specifications @ file:///tmp/tmpkv1z7p57/src
jupyter-events @ file:///home/conda/feedstock_root/build_artifacts/jupyter_events_1710805637316/work
jupyter-lsp @ file:///home/conda/feedstock_root/build_artifacts/jupyter-lsp-meta_1712707420468/work/jupyter-lsp
jupyter_client @ file:///home/conda/feedstock_root/build_artifacts/jupyter_client_1716472197302/work
jupyter_core @ file:///Users/runner/miniforge3/conda-bld/jupyter_core_1710257589360/work
jupyter_server @ file:///home/conda/feedstock_root/build_artifacts/jupyter_server_1720816649297/work
jupyter_server_terminals @ file:///home/conda/feedstock_root/build_artifacts/jupyter_server_terminals_1710262634903/work
jupyterlab @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_1721396525904/work
jupyterlab_pygments @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_pygments_1707149102966/work
jupyterlab_server @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_server-split_1721163288448/work
kiwisolver==1.4.5
langchain==0.3.1
langchain-core==0.3.11
langchain-ollama==0.1.1
langchain-openai==0.2.1
langchain-text-splitters==0.3.0
langsmith==0.1.135
llvmlite==0.43.0
locket==1.0.0
lz4==4.3.3
markdown-it-py==3.0.0
MarkupSafe @ file:///Users/runner/miniforge3/conda-bld/markupsafe_1706900163039/work
marshmallow==3.22.0
matplotlib==3.9.1
matplotlib-inline @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-inline_1713250518406/work
maturin==1.7.1
mdurl==0.1.2
mistune @ file:///home/conda/feedstock_root/build_artifacts/mistune_1698947099619/work
mpmath==1.3.0
msgpack==1.0.8
multidict==6.0.5
mypy-extensions==1.0.0
nbclient @ file:///home/conda/feedstock_root/build_artifacts/nbclient_1710317608672/work
nbconvert @ file:///home/conda/feedstock_root/build_artifacts/nbconvert-meta_1718135430380/work
nbformat @ file:///home/conda/feedstock_root/build_artifacts/nbformat_1712238998817/work
nest_asyncio @ file:///home/conda/feedstock_root/build_artifacts/nest-asyncio_1705850609492/work
nltk==3.9.1
notebook_shim @ file:///home/conda/feedstock_root/build_artifacts/notebook-shim_1707957777232/work
numba==0.60.0
numpy==2.0.0
ollama==0.3.1
openai==1.51.2
openpyxl==3.1.5
orjson==3.10.6
overrides @ file:///home/conda/feedstock_root/build_artifacts/overrides_1706394519472/work
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1718189413536/work
pandas==2.2.3
pandocfilters @ file:///home/conda/feedstock_root/build_artifacts/pandocfilters_1631603243851/work
parso @ file:///home/conda/feedstock_root/build_artifacts/parso_1712320355065/work
partd==1.4.2
pathspec==0.12.1
pbr==6.1.0
pexpect @ file:///home/conda/feedstock_root/build_artifacts/pexpect_1706113125309/work
pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1602536217715/work
pillow==10.4.0
pkgutil_resolve_name @ file:///home/conda/feedstock_root/build_artifacts/pkgutil-resolve-name_1694617248815/work
platformdirs @ file:///home/conda/feedstock_root/build_artifacts/platformdirs_1715777629804/work
pluggy==1.5.0
prometheus_client @ file:///home/conda/feedstock_root/build_artifacts/prometheus_client_1707932675456/work
prompt_toolkit @ file:///home/conda/feedstock_root/build_artifacts/prompt-toolkit_1718047967974/work
psutil @ file:///Users/runner/miniforge3/conda-bld/psutil_1719274598821/work
ptyprocess @ file:///home/conda/feedstock_root/build_artifacts/ptyprocess_1609419310487/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl
pure_eval @ file:///home/conda/feedstock_root/build_artifacts/pure_eval_1721585709575/work
pyarrow==17.0.0
pyarrow-hotfix==0.6
# Editable install with no version control (pybindings==0.1.3)
-e /Users/wic053/Documents/kmertools/pybindings
pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1711811537435/work
pydantic==2.9.2
pydantic-settings==2.5.2
pydantic_core==2.23.4
Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1714846767233/work
pyhumps==3.8.0
# Editable install with no version control (pykmertools==0.1.3)
-e /Users/wic053/Documents/kmertools/conda
pynamodb==5.5.0
pyobjc-core @ file:///Users/runner/miniforge3/conda-bld/pyobjc-core_1718171484886/work
pyobjc-framework-Cocoa @ file:///Users/runner/miniforge3/conda-bld/pyobjc-framework-cocoa_1718645419122/work
pyorc==0.9.0
pyparsing==3.1.2
PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1661604839144/work
pytest==8.3.2
python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1709299778482/work
python-dotenv==1.0.1
python-json-logger @ file:///home/conda/feedstock_root/build_artifacts/python-json-logger_1677079630776/work
pytz @ file:///home/conda/feedstock_root/build_artifacts/pytz_1706886791323/work
PyYAML @ file:///Users/runner/miniforge3/conda-bld/pyyaml_1695373531920/work
pyzmq @ file:///Users/runner/miniforge3/conda-bld/pyzmq_1715024418681/work
q==2.7
referencing @ file:///home/conda/feedstock_root/build_artifacts/referencing_1714619483868/work
regex==2024.5.15
requests==2.31.0
requests-toolbelt==1.0.0
rfc3339-validator @ file:///home/conda/feedstock_root/build_artifacts/rfc3339-validator_1638811747357/work
rfc3986-validator @ file:///home/conda/feedstock_root/build_artifacts/rfc3986-validator_1598024191506/work
rich==13.7.1
rouge_score==0.1.2
rpds-py @ file:///Users/runner/miniforge3/conda-bld/rpds-py_1720476574189/work
# Editable install with no version control (rsbio-seq==0.1.1)
-e /Users/wic053/Documents/rsbio-seq
s3transfer==0.10.2
scikit-learn==1.5.1
scipy==1.14.0
scitrack==2021.5.3
seaborn==0.13.2
Send2Trash @ file:///Users/runner/miniforge3/conda-bld/send2trash_1712585336584/work
setuptools==71.0.4
six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work
smart-open==6.3.0
sniffio @ file:///home/conda/feedstock_root/build_artifacts/sniffio_1708952932303/work
sortedcontainers==2.4.0
soupsieve @ file:///home/conda/feedstock_root/build_artifacts/soupsieve_1693929250441/work
SQLAlchemy==2.0.31
stack-data @ file:///home/conda/feedstock_root/build_artifacts/stack_data_1669632077133/work
stevedore==5.3.0
StrEnum==0.4.15
sympy==1.13.1
tblib==3.0.0
tenacity==8.5.0
terminado @ file:///Users/runner/miniforge3/conda-bld/terminado_1710263781917/work
# Editable install with no version control (test_maturin==0.1.0)
-e /Users/wic053/test_maturin
threadpoolctl==3.5.0
tiktoken==0.7.0
tinycss2 @ file:///home/conda/feedstock_root/build_artifacts/tinycss2_1713974937325/work
tomli @ file:///home/conda/feedstock_root/build_artifacts/tomli_1644342247877/work
toolz==0.12.1
tornado @ file:///Users/runner/miniforge3/conda-bld/tornado_1717722751194/work
tqdm==4.66.4
traitlets @ file:///home/conda/feedstock_root/build_artifacts/traitlets_1713535121073/work
types-python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/types-python-dateutil_1710589910274/work
types-requests==2.32.0.20240712
typing-inspect==0.9.0
typing-utils @ file:///home/conda/feedstock_root/build_artifacts/typing_utils_1622899189314/work
typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/typing_extensions_1717802530399/work
typish==1.9.3
tzdata==2024.1
uri-template @ file:///home/conda/feedstock_root/build_artifacts/uri-template_1688655812972/work/dist
urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1719391292974/work
wcwidth @ file:///home/conda/feedstock_root/build_artifacts/wcwidth_1704731205417/work
webcolors @ file:///home/conda/feedstock_root/build_artifacts/webcolors_1717667289718/work
webencodings @ file:///home/conda/feedstock_root/build_artifacts/webencodings_1694681268211/work
websocket-client @ file:///home/conda/feedstock_root/build_artifacts/websocket-client_1713923384721/work
Werkzeug==3.0.4
wheel==0.43.0
wrapt==1.16.0
xyzservices==2024.6.0
yarl==1.9.4
zict==3.0.0
zipp @ file:///home/conda/feedstock_root/build_artifacts/zipp_1718013267051/work
zstandard==0.23.0