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Update getting_started.Rmd
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vignettes/getting_started.Rmd

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@@ -224,7 +224,7 @@ The function `refit_Growth()` can be used to generate plots of the growth parame
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<!-- # # data(fits1);data(fits2) -->
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<!-- # ``` -->
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Then, run the function with the breakpoints as-is and inspect the outputs.
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Run the function with the breakpoints as-is and inspect the outputs.
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```{r, echo = TRUE, include = TRUE, warning = FALSE}
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# fits1 <- refit_Growth(simulated_data, breakpoints, showPlot = FALSE)
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# Updating and re-fitting the breakpoints
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Based on the exploration above, you may decide to manually combine the second and third strata, using just a single breakpoint north to south. In this case, we would do away with the breakpoint at $-141^{\circ}$)W, replacing it with `-Inf`:
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Based on the exploration above, you may decide to manually combine the second and third strata, using just a single breakpoint north to south. In this case, we would do away with the breakpoint at $-141^{\circ}$)W, replacing it with `-Inf`.
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```{r, echo = TRUE, include = TRUE, warning = FALSE}
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# showPlot = FALSE) ## refit the curves
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```
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We can repeat the visualization and see that 1) the parameter values are now more distinct from one another and 2) so are the curves.
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We can repeat the visualization and see that 1) the key parameter values are now more distinct from one another and 2) so are the curves.
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```{r, echo = TRUE, include = TRUE, warning = FALSE}
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fits2$pars_plot

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