diff --git a/.github/workflows/CMake.yml b/.github/workflows/CMake.yml index f96fb08..5cdf038 100644 --- a/.github/workflows/CMake.yml +++ b/.github/workflows/CMake.yml @@ -23,13 +23,13 @@ jobs: with: cuda: '11.7.0' - - name: boost install - id: boost-install + - name: dependencies install + id: dependencies-install run: sudo apt-get update && sudo apt-get install -yq libboost-all-dev libhdf5-dev libtbb-dev - uses: actions/checkout@v3 - - name: echo settings + - name: Echo settings run: nvcc -V - run: mkdir ${{github.workspace}}/build diff --git a/README.md b/README.md index 25e3c55..f08452b 100644 --- a/README.md +++ b/README.md @@ -40,7 +40,6 @@ We suggest utilizing the provided Dockerfile, which automates the installation o docker build -t spinwalk . docker run --gpus all --rm -it --runtime=nvidia spinwalk bash ``` -Execute the **spinwalk** command, and you'll encounter the help menu along with the list of available GPU(s) in the output. ### CMake #### Dependencies diff --git a/config/dwi/dwi_baseline.ini b/config/dwi/dwi_baseline.ini index d54c084..96a2ca9 100644 --- a/config/dwi/dwi_baseline.ini +++ b/config/dwi/dwi_baseline.ini @@ -3,10 +3,10 @@ SEQ_NAME = dwi_base PARENT_CONFIG = ../config_default.ini [FILES] -OUTPUT_DIR = ../../../outputs/dwi/ +OUTPUT_DIR = ../../../outputs/dwi ;PHANTOM[0] = ../../../phantoms/restricted_diffusion_model_cylinder.h5 -PHANTOM[0] = ../../../phantoms/restricted_diffusion_model_sphere.h5 -;PHANTOM[1] = ../../../phantoms/free_diffusion_model.dat +;PHANTOM[0] = ../../../phantoms/restricted_diffusion_model_sphere.h5 +PHANTOM[0] = ../../../phantoms/free_diffusion_model.h5 [TISSUE_PARAMETERS] ; m^2/Sec. @@ -15,38 +15,40 @@ DIFFUSIVITY[1] = 0.6e-9 ; Probability to diffuse from tissue X to tissue Y. X and Y are taken from the levels in the mask P_XY[0] = 1.00 1.00 P_XY[1] = 1.00 1.00 -; T1 and T2 in seconds -T1[0] = 10000 -T1[1] = 10000 -T2[0] = 10000 -T2[1] = 10000 +; T1 and T2 in millisecond (float) +T1[0] = 1000000 +T1[1] = 1000000 +T2[0] = 1000000 +T2[1] = 1000000 [SCAN_PARAMETERS] -TR = 0.031 -TE[0] = 0.03 +; repetition time in microsecond (integer) +TR = 70e3 +; echo time in microsecond (integer) +TE[0] = 60e3 ; RF Flip angle in degree RF_FA[0] = 90.0 RF_FA[1] = 180.0 ; RF Phase in degree. The first RF phase is always 0.0, but can be controlled by PHASE_CYCLING in STEADY_STATE RF_PH[0] = 0.0 RF_PH[1] = 90.0 -; Time (sec) to apply RF. The first RF start time is always 0.0 +; Time to apply RF in microsecond (integer). The first RF start time is always 0.0 RF_T[0] = 0.0 -RF_T[1] = 0.015 -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP +RF_T[1] = 30e3 +; Apply gradient in mT/m for each axis. Gradients are active for one TIME_STEP GRADIENT_XYZ[0] = 0.0 0.0 0.0 GRADIENT_XYZ[1] = 0.0 0.0 0.0 -; Time (sec) to apply gradient. -GRADIENT_T[0] = 0.001 -GRADIENT_T[1] = 0.029 - +; Time to apply gradient in micro-second (integer). +GRADIENT_T[0] = 15e3 +GRADIENT_T[1] = 45e3 +; time intervals per random-walk in micro-second (integer) TIME_STEP = 50 [SIMULATION_PARAMETERS] ; use 0 for random seed generation, otherwise use a positive integer to make a reproducible simulation SEED = 25 NUMBER_OF_SPINS = 1e6 -SAMPLE_LENGTH_SCALES[0] = 0.5 +SAMPLE_LENGTH_SCALES[0] = 1.0 MAX_ITERATIONS = 1e6 RECORD_TRAJECTORY = 0 diff --git a/config/dwi/dwi_x_100.ini b/config/dwi/dwi_x_100.ini index bb1066a..dccfa0a 100644 --- a/config/dwi/dwi_x_100.ini +++ b/config/dwi/dwi_x_100.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_100 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 4.46922 0.0 0.0 -GRADIENT_XYZ[1] = 4.46922 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 4317.58990 0.0 0.0 +GRADIENT_XYZ[1] = 4317.58990 0.0 0.0 diff --git a/config/dwi/dwi_x_1000.ini b/config/dwi/dwi_x_1000.ini index c18e62f..d970859 100644 --- a/config/dwi/dwi_x_1000.ini +++ b/config/dwi/dwi_x_1000.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1000 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 14.13291 0.0 0.0 -GRADIENT_XYZ[1] = 14.13291 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 13653.41808 0.0 0.0 +GRADIENT_XYZ[1] = 13653.41808 0.0 0.0 diff --git a/config/dwi/dwi_x_1100.ini b/config/dwi/dwi_x_1100.ini index 1d2293f..c849659 100644 --- a/config/dwi/dwi_x_1100.ini +++ b/config/dwi/dwi_x_1100.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1100 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 14.82272 0.0 0.0 -GRADIENT_XYZ[1] = 14.82272 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 14319.82569 0.0 0.0 +GRADIENT_XYZ[1] = 14319.82569 0.0 0.0 diff --git a/config/dwi/dwi_x_1150.ini b/config/dwi/dwi_x_1150.ini index 5529394..4689778 100644 --- a/config/dwi/dwi_x_1150.ini +++ b/config/dwi/dwi_x_1150.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1150 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP +; Apply gradient in mT/m for each axis. Gradients are active for one TIME_STEP GRADIENT_XYZ[0] = 15.15586 0.0 0.0 GRADIENT_XYZ[1] = 15.15586 0.0 0.0 diff --git a/config/dwi/dwi_x_1200.ini b/config/dwi/dwi_x_1200.ini index 14a12f6..14bc466 100644 --- a/config/dwi/dwi_x_1200.ini +++ b/config/dwi/dwi_x_1200.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1200 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 15.48183 0.0 0.0 -GRADIENT_XYZ[1] = 15.48183 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 14956.57014 0.0 0.0 +GRADIENT_XYZ[1] = 14956.57014 0.0 0.0 diff --git a/config/dwi/dwi_x_1300.ini b/config/dwi/dwi_x_1300.ini index 4e101e2..8495173 100644 --- a/config/dwi/dwi_x_1300.ini +++ b/config/dwi/dwi_x_1300.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1300 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 16.11400 0.0 0.0 -GRADIENT_XYZ[1] = 16.11400 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 15567.29177 0.0 0.0 +GRADIENT_XYZ[1] = 15567.29177 0.0 0.0 diff --git a/config/dwi/dwi_x_1350.ini b/config/dwi/dwi_x_1350.ini index 6695e8a..7f09cbd 100644 --- a/config/dwi/dwi_x_1350.ini +++ b/config/dwi/dwi_x_1350.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1350 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP +; Apply gradient in mT/m for each axis. Gradients are active for one TIME_STEP GRADIENT_XYZ[0] = 16.42096 0.0 0.0 GRADIENT_XYZ[1] = 16.42096 0.0 0.0 diff --git a/config/dwi/dwi_x_1400.ini b/config/dwi/dwi_x_1400.ini index 6f084d5..6d6e883 100644 --- a/config/dwi/dwi_x_1400.ini +++ b/config/dwi/dwi_x_1400.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1400 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 16.72229 0.0 0.0 -GRADIENT_XYZ[1] = 16.72229 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 16154.94214 0.0 0.0 +GRADIENT_XYZ[1] = 16154.94214 0.0 0.0 diff --git a/config/dwi/dwi_x_1500.ini b/config/dwi/dwi_x_1500.ini index b1d595d..ef45b27 100644 --- a/config/dwi/dwi_x_1500.ini +++ b/config/dwi/dwi_x_1500.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1500 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 17.30921 0.0 0.0 -GRADIENT_XYZ[1] = 17.30921 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 16721.95377 0.0 0.0 +GRADIENT_XYZ[1] = 16721.95377 0.0 0.0 diff --git a/config/dwi/dwi_x_1600.ini b/config/dwi/dwi_x_1600.ini index a6719a3..dd66c37 100644 --- a/config/dwi/dwi_x_1600.ini +++ b/config/dwi/dwi_x_1600.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1600 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 17.87688 0.0 0.0 -GRADIENT_XYZ[1] = 17.87688 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 17270.35959 0.0 0.0 +GRADIENT_XYZ[1] = 17270.35959 0.0 0.0 diff --git a/config/dwi/dwi_x_1700.ini b/config/dwi/dwi_x_1700.ini index 9941ad9..5b98232 100644 --- a/config/dwi/dwi_x_1700.ini +++ b/config/dwi/dwi_x_1700.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1700 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 18.42706 0.0 0.0 -GRADIENT_XYZ[1] = 18.42706 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 17801.87920 0.0 0.0 +GRADIENT_XYZ[1] = 17801.87920 0.0 0.0 diff --git a/config/dwi/dwi_x_1750.ini b/config/dwi/dwi_x_1750.ini index d6e1e70..034a070 100644 --- a/config/dwi/dwi_x_1750.ini +++ b/config/dwi/dwi_x_1750.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1750 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP +; Apply gradient in mT/m for each axis. Gradients are active for one TIME_STEP GRADIENT_XYZ[0] = 18.69608 0.0 0.0 GRADIENT_XYZ[1] = 18.69608 0.0 0.0 diff --git a/config/dwi/dwi_x_1800.ini b/config/dwi/dwi_x_1800.ini index 57898ee..ed13fce 100644 --- a/config/dwi/dwi_x_1800.ini +++ b/config/dwi/dwi_x_1800.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1800 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 18.96129 0.0 0.0 -GRADIENT_XYZ[1] = 18.96129 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 18317.98257 0.0 0.0 +GRADIENT_XYZ[1] = 18317.98257 0.0 0.0 diff --git a/config/dwi/dwi_x_1900.ini b/config/dwi/dwi_x_1900.ini index 682d6ad..eb0a00c 100644 --- a/config/dwi/dwi_x_1900.ini +++ b/config/dwi/dwi_x_1900.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_1900 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 19.48087 0.0 0.0 -GRADIENT_XYZ[1] = 19.48087 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 18819.93805 0.0 0.0 +GRADIENT_XYZ[1] = 18819.93805 0.0 0.0 diff --git a/config/dwi/dwi_x_200.ini b/config/dwi/dwi_x_200.ini index 6035e34..cae0188 100644 --- a/config/dwi/dwi_x_200.ini +++ b/config/dwi/dwi_x_200.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_200 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 6.32043 0.0 0.0 -GRADIENT_XYZ[1] = 6.32043 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 6105.99419 0.0 0.0 +GRADIENT_XYZ[1] = 6105.99419 0.0 0.0 diff --git a/config/dwi/dwi_x_2000.ini b/config/dwi/dwi_x_2000.ini index 9793f55..f77ae81 100644 --- a/config/dwi/dwi_x_2000.ini +++ b/config/dwi/dwi_x_2000.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2000 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 19.98695 0.0 0.0 -GRADIENT_XYZ[1] = 19.98695 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 19308.84903 0.0 0.0 +GRADIENT_XYZ[1] = 19308.84903 0.0 0.0 diff --git a/config/dwi/dwi_x_2100.ini b/config/dwi/dwi_x_2100.ini index b201076..009a937 100644 --- a/config/dwi/dwi_x_2100.ini +++ b/config/dwi/dwi_x_2100.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2100 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 20.48053 0.0 0.0 -GRADIENT_XYZ[1] = 20.48053 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 19785.68253 0.0 0.0 +GRADIENT_XYZ[1] = 19785.68253 0.0 0.0 diff --git a/config/dwi/dwi_x_2200.ini b/config/dwi/dwi_x_2200.ini index 761d556..04e1af5 100644 --- a/config/dwi/dwi_x_2200.ini +++ b/config/dwi/dwi_x_2200.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2200 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 20.96249 0.0 0.0 -GRADIENT_XYZ[1] = 20.96249 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 20251.29171 0.0 0.0 +GRADIENT_XYZ[1] = 20251.29171 0.0 0.0 diff --git a/config/dwi/dwi_x_2300.ini b/config/dwi/dwi_x_2300.ini index 83b61b5..30d0c4b 100644 --- a/config/dwi/dwi_x_2300.ini +++ b/config/dwi/dwi_x_2300.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2300 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 21.43362 0.0 0.0 -GRADIENT_XYZ[1] = 21.43362 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 20706.43374 0.0 0.0 +GRADIENT_XYZ[1] = 20706.43374 0.0 0.0 diff --git a/config/dwi/dwi_x_2400.ini b/config/dwi/dwi_x_2400.ini index 6dec13f..694666e 100644 --- a/config/dwi/dwi_x_2400.ini +++ b/config/dwi/dwi_x_2400.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2400 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 21.89461 0.0 0.0 -GRADIENT_XYZ[1] = 21.89461 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 21151.78434 0.0 0.0 +GRADIENT_XYZ[1] = 21151.78434 0.0 0.0 diff --git a/config/dwi/dwi_x_2500.ini b/config/dwi/dwi_x_2500.ini index 89477b6..1f6ebb2 100644 --- a/config/dwi/dwi_x_2500.ini +++ b/config/dwi/dwi_x_2500.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2500 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 22.34609 0.0 0.0 -GRADIENT_XYZ[1] = 22.34609 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 21587.94949 0.0 0.0 +GRADIENT_XYZ[1] = 21587.94949 0.0 0.0 diff --git a/config/dwi/dwi_x_2600.ini b/config/dwi/dwi_x_2600.ini index c06be86..cfa9285 100644 --- a/config/dwi/dwi_x_2600.ini +++ b/config/dwi/dwi_x_2600.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2600 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 22.78863 0.0 0.0 -GRADIENT_XYZ[1] = 22.78863 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 22015.47515 0.0 0.0 +GRADIENT_XYZ[1] = 22015.47515 0.0 0.0 diff --git a/config/dwi/dwi_x_2700.ini b/config/dwi/dwi_x_2700.ini index 58e6da5..50c4c9e 100644 --- a/config/dwi/dwi_x_2700.ini +++ b/config/dwi/dwi_x_2700.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2700 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 23.22274 0.0 0.0 -GRADIENT_XYZ[1] = 23.22274 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 22434.85521 0.0 0.0 +GRADIENT_XYZ[1] = 22434.85521 0.0 0.0 diff --git a/config/dwi/dwi_x_2800.ini b/config/dwi/dwi_x_2800.ini index 47e56cb..dbc5a66 100644 --- a/config/dwi/dwi_x_2800.ini +++ b/config/dwi/dwi_x_2800.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2800 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 23.64888 0.0 0.0 -GRADIENT_XYZ[1] = 23.64888 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 22846.53827 0.0 0.0 +GRADIENT_XYZ[1] = 22846.53827 0.0 0.0 diff --git a/config/dwi/dwi_x_2900.ini b/config/dwi/dwi_x_2900.ini index dd1b260..990f604 100644 --- a/config/dwi/dwi_x_2900.ini +++ b/config/dwi/dwi_x_2900.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_2900 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 24.06748 0.0 0.0 -GRADIENT_XYZ[1] = 24.06748 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 23250.93317 0.0 0.0 +GRADIENT_XYZ[1] = 23250.93317 0.0 0.0 diff --git a/config/dwi/dwi_x_300.ini b/config/dwi/dwi_x_300.ini index dd19e6e..d0ee135 100644 --- a/config/dwi/dwi_x_300.ini +++ b/config/dwi/dwi_x_300.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_300 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 7.74091 0.0 0.0 -GRADIENT_XYZ[1] = 7.74091 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 7478.28507 0.0 0.0 +GRADIENT_XYZ[1] = 7478.28507 0.0 0.0 diff --git a/config/dwi/dwi_x_3000.ini b/config/dwi/dwi_x_3000.ini index a76d12a..f2698f0 100644 --- a/config/dwi/dwi_x_3000.ini +++ b/config/dwi/dwi_x_3000.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3000 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 24.47892 0.0 0.0 -GRADIENT_XYZ[1] = 24.47892 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 23648.41382 0.0 0.0 +GRADIENT_XYZ[1] = 23648.41382 0.0 0.0 diff --git a/config/dwi/dwi_x_3100.ini b/config/dwi/dwi_x_3100.ini index 41b21ee..6cee969 100644 --- a/config/dwi/dwi_x_3100.ini +++ b/config/dwi/dwi_x_3100.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3100 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 24.88356 0.0 0.0 -GRADIENT_XYZ[1] = 24.88356 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 24039.32317 0.0 0.0 +GRADIENT_XYZ[1] = 24039.32317 0.0 0.0 diff --git a/config/dwi/dwi_x_3200.ini b/config/dwi/dwi_x_3200.ini index 789b4a3..8c9ca10 100644 --- a/config/dwi/dwi_x_3200.ini +++ b/config/dwi/dwi_x_3200.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3200 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 25.28172 0.0 0.0 -GRADIENT_XYZ[1] = 25.28172 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 24423.97677 0.0 0.0 +GRADIENT_XYZ[1] = 24423.97677 0.0 0.0 diff --git a/config/dwi/dwi_x_3300.ini b/config/dwi/dwi_x_3300.ini index bb7cfa0..4124b0d 100644 --- a/config/dwi/dwi_x_3300.ini +++ b/config/dwi/dwi_x_3300.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3300 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 25.67371 0.0 0.0 -GRADIENT_XYZ[1] = 25.67371 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 24802.66566 0.0 0.0 +GRADIENT_XYZ[1] = 24802.66566 0.0 0.0 diff --git a/config/dwi/dwi_x_3400.ini b/config/dwi/dwi_x_3400.ini index da8514d..0af39d3 100644 --- a/config/dwi/dwi_x_3400.ini +++ b/config/dwi/dwi_x_3400.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3400 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 26.05980 0.0 0.0 -GRADIENT_XYZ[1] = 26.05980 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 25175.65900 0.0 0.0 +GRADIENT_XYZ[1] = 25175.65900 0.0 0.0 diff --git a/config/dwi/dwi_x_3500.ini b/config/dwi/dwi_x_3500.ini index 5b3528d..c881ef4 100644 --- a/config/dwi/dwi_x_3500.ini +++ b/config/dwi/dwi_x_3500.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3500 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 26.44026 0.0 0.0 -GRADIENT_XYZ[1] = 26.44026 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 25543.20631 0.0 0.0 +GRADIENT_XYZ[1] = 25543.20631 0.0 0.0 diff --git a/config/dwi/dwi_x_3600.ini b/config/dwi/dwi_x_3600.ini index aaa2772..0697a22 100644 --- a/config/dwi/dwi_x_3600.ini +++ b/config/dwi/dwi_x_3600.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3600 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 26.81531 0.0 0.0 -GRADIENT_XYZ[1] = 26.81531 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 25905.53939 0.0 0.0 +GRADIENT_XYZ[1] = 25905.53939 0.0 0.0 diff --git a/config/dwi/dwi_x_3700.ini b/config/dwi/dwi_x_3700.ini index 6d6e8ca..597fce2 100644 --- a/config/dwi/dwi_x_3700.ini +++ b/config/dwi/dwi_x_3700.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3700 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 27.18520 0.0 0.0 -GRADIENT_XYZ[1] = 27.18520 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 26262.87406 0.0 0.0 +GRADIENT_XYZ[1] = 26262.87406 0.0 0.0 diff --git a/config/dwi/dwi_x_3800.ini b/config/dwi/dwi_x_3800.ini index aa0ac22..80bd1da 100644 --- a/config/dwi/dwi_x_3800.ini +++ b/config/dwi/dwi_x_3800.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3800 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 27.55012 0.0 0.0 -GRADIENT_XYZ[1] = 27.55012 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 26615.41163 0.0 0.0 +GRADIENT_XYZ[1] = 26615.41163 0.0 0.0 diff --git a/config/dwi/dwi_x_3900.ini b/config/dwi/dwi_x_3900.ini index a3b14b9..8cc47cb 100644 --- a/config/dwi/dwi_x_3900.ini +++ b/config/dwi/dwi_x_3900.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_3900 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 27.91026 0.0 0.0 -GRADIENT_XYZ[1] = 27.91026 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 26963.34028 0.0 0.0 +GRADIENT_XYZ[1] = 26963.34028 0.0 0.0 diff --git a/config/dwi/dwi_x_400.ini b/config/dwi/dwi_x_400.ini index 3555e31..b9cda89 100644 --- a/config/dwi/dwi_x_400.ini +++ b/config/dwi/dwi_x_400.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_400 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 8.93844 0.0 0.0 -GRADIENT_XYZ[1] = 8.93844 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 8635.17980 0.0 0.0 +GRADIENT_XYZ[1] = 8635.17980 0.0 0.0 diff --git a/config/dwi/dwi_x_4000.ini b/config/dwi/dwi_x_4000.ini index 956cf87..2ee99be 100644 --- a/config/dwi/dwi_x_4000.ini +++ b/config/dwi/dwi_x_4000.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4000 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 28.26582 0.0 0.0 -GRADIENT_XYZ[1] = 28.26582 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 27306.83617 0.0 0.0 +GRADIENT_XYZ[1] = 27306.83617 0.0 0.0 diff --git a/config/dwi/dwi_x_4100.ini b/config/dwi/dwi_x_4100.ini index b4fdf3a..ab16561 100644 --- a/config/dwi/dwi_x_4100.ini +++ b/config/dwi/dwi_x_4100.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4100 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 28.61696 0.0 0.0 -GRADIENT_XYZ[1] = 28.61696 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 27646.06453 0.0 0.0 +GRADIENT_XYZ[1] = 27646.06453 0.0 0.0 diff --git a/config/dwi/dwi_x_4200.ini b/config/dwi/dwi_x_4200.ini index 8e0883a..f969010 100644 --- a/config/dwi/dwi_x_4200.ini +++ b/config/dwi/dwi_x_4200.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4200 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 28.96385 0.0 0.0 -GRADIENT_XYZ[1] = 28.96385 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 27981.18058 0.0 0.0 +GRADIENT_XYZ[1] = 27981.18058 0.0 0.0 diff --git a/config/dwi/dwi_x_4300.ini b/config/dwi/dwi_x_4300.ini index 33539a5..d66b7e0 100644 --- a/config/dwi/dwi_x_4300.ini +++ b/config/dwi/dwi_x_4300.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4300 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 29.30663 0.0 0.0 -GRADIENT_XYZ[1] = 29.30663 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 28312.33033 0.0 0.0 +GRADIENT_XYZ[1] = 28312.33033 0.0 0.0 diff --git a/config/dwi/dwi_x_4400.ini b/config/dwi/dwi_x_4400.ini index 4380e07..f6391dd 100644 --- a/config/dwi/dwi_x_4400.ini +++ b/config/dwi/dwi_x_4400.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4400 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 29.64544 0.0 0.0 -GRADIENT_XYZ[1] = 29.64544 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 28639.65139 0.0 0.0 +GRADIENT_XYZ[1] = 28639.65139 0.0 0.0 diff --git a/config/dwi/dwi_x_4500.ini b/config/dwi/dwi_x_4500.ini index b475c86..6c924f9 100644 --- a/config/dwi/dwi_x_4500.ini +++ b/config/dwi/dwi_x_4500.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4500 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 29.98043 0.0 0.0 -GRADIENT_XYZ[1] = 29.98043 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 28963.27354 0.0 0.0 +GRADIENT_XYZ[1] = 28963.27354 0.0 0.0 diff --git a/config/dwi/dwi_x_4600.ini b/config/dwi/dwi_x_4600.ini index e97cacf..a38062e 100644 --- a/config/dwi/dwi_x_4600.ini +++ b/config/dwi/dwi_x_4600.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4600 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 30.31172 0.0 0.0 -GRADIENT_XYZ[1] = 30.31172 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 29283.31943 0.0 0.0 +GRADIENT_XYZ[1] = 29283.31943 0.0 0.0 diff --git a/config/dwi/dwi_x_4700.ini b/config/dwi/dwi_x_4700.ini index e771cbb..18f695b 100644 --- a/config/dwi/dwi_x_4700.ini +++ b/config/dwi/dwi_x_4700.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4700 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 30.63942 0.0 0.0 -GRADIENT_XYZ[1] = 30.63942 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 29599.90505 0.0 0.0 +GRADIENT_XYZ[1] = 29599.90505 0.0 0.0 diff --git a/config/dwi/dwi_x_4800.ini b/config/dwi/dwi_x_4800.ini index 273fbbf..4f5a008 100644 --- a/config/dwi/dwi_x_4800.ini +++ b/config/dwi/dwi_x_4800.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4800 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 30.96366 0.0 0.0 -GRADIENT_XYZ[1] = 30.96366 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 29913.14028 0.0 0.0 +GRADIENT_XYZ[1] = 29913.14028 0.0 0.0 diff --git a/config/dwi/dwi_x_4900.ini b/config/dwi/dwi_x_4900.ini index 221c689..bd212e7 100644 --- a/config/dwi/dwi_x_4900.ini +++ b/config/dwi/dwi_x_4900.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_4900 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 31.28453 0.0 0.0 -GRADIENT_XYZ[1] = 31.28453 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 30223.12929 0.0 0.0 +GRADIENT_XYZ[1] = 30223.12929 0.0 0.0 diff --git a/config/dwi/dwi_x_50.ini b/config/dwi/dwi_x_50.ini deleted file mode 100644 index 67f56f6..0000000 --- a/config/dwi/dwi_x_50.ini +++ /dev/null @@ -1,8 +0,0 @@ -SEQ_NAME = dwi_x_50 -[PARENT] -PARENT_CONFIG = dwi_baseline.ini - -[SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 3.16021 0.0 0.0 -GRADIENT_XYZ[1] = 3.16021 0.0 0.0 diff --git a/config/dwi/dwi_x_500.ini b/config/dwi/dwi_x_500.ini index e1cc76a..289c479 100644 --- a/config/dwi/dwi_x_500.ini +++ b/config/dwi/dwi_x_500.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_500 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 9.99348 0.0 0.0 -GRADIENT_XYZ[1] = 9.99348 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 9654.42451 0.0 0.0 +GRADIENT_XYZ[1] = 9654.42451 0.0 0.0 diff --git a/config/dwi/dwi_x_5000.ini b/config/dwi/dwi_x_5000.ini index 0e02478..db2c3fa 100644 --- a/config/dwi/dwi_x_5000.ini +++ b/config/dwi/dwi_x_5000.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_5000 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 31.60215 0.0 0.0 -GRADIENT_XYZ[1] = 31.60215 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 30529.97096 0.0 0.0 +GRADIENT_XYZ[1] = 30529.97096 0.0 0.0 diff --git a/config/dwi/dwi_x_600.ini b/config/dwi/dwi_x_600.ini index 648a46f..e98a6cb 100644 --- a/config/dwi/dwi_x_600.ini +++ b/config/dwi/dwi_x_600.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_600 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 10.94731 0.0 0.0 -GRADIENT_XYZ[1] = 10.94731 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 10575.89217 0.0 0.0 +GRADIENT_XYZ[1] = 10575.89217 0.0 0.0 diff --git a/config/dwi/dwi_x_700.ini b/config/dwi/dwi_x_700.ini index d410d56..2fae4ef 100644 --- a/config/dwi/dwi_x_700.ini +++ b/config/dwi/dwi_x_700.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_700 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 11.82444 0.0 0.0 -GRADIENT_XYZ[1] = 11.82444 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 11423.26914 0.0 0.0 +GRADIENT_XYZ[1] = 11423.26914 0.0 0.0 diff --git a/config/dwi/dwi_x_800.ini b/config/dwi/dwi_x_800.ini index 87633c0..35ecb86 100644 --- a/config/dwi/dwi_x_800.ini +++ b/config/dwi/dwi_x_800.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_800 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 12.64086 0.0 0.0 -GRADIENT_XYZ[1] = 12.64086 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 12211.98838 0.0 0.0 +GRADIENT_XYZ[1] = 12211.98838 0.0 0.0 diff --git a/config/dwi/dwi_x_900.ini b/config/dwi/dwi_x_900.ini index a956c59..513e029 100644 --- a/config/dwi/dwi_x_900.ini +++ b/config/dwi/dwi_x_900.ini @@ -3,6 +3,6 @@ SEQ_NAME = dwi_x_900 PARENT_CONFIG = dwi_baseline.ini [SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 13.40766 0.0 0.0 -GRADIENT_XYZ[1] = 13.40766 0.0 0.0 +; Apply gradient in mT/m for each axis. Gradients are active for one DWELL_TIME +GRADIENT_XYZ[0] = 12952.76970 0.0 0.0 +GRADIENT_XYZ[1] = 12952.76970 0.0 0.0 diff --git a/config/dwi/dwi_y_500.ini b/config/dwi/dwi_y_500.ini deleted file mode 100644 index 48739a2..0000000 --- a/config/dwi/dwi_y_500.ini +++ /dev/null @@ -1,8 +0,0 @@ -SEQ_NAME = dwi_y_500 -[PARENT] -PARENT_CONFIG = dwi_baseline.ini - -[SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 0.0 9.99348 0.0 -GRADIENT_XYZ[1] = 0.0 9.99348 0.0 diff --git a/config/dwi/dwi_z_500.ini b/config/dwi/dwi_z_500.ini deleted file mode 100644 index 809dba3..0000000 --- a/config/dwi/dwi_z_500.ini +++ /dev/null @@ -1,8 +0,0 @@ -SEQ_NAME = dwi_z_500 -[PARENT] -PARENT_CONFIG = dwi_baseline.ini - -[SCAN_PARAMETERS] -; Apply gradient in T/m for each axis. Gradients are active for one TIME_STEP -GRADIENT_XYZ[0] = 0.0 0.0 9.99348 -GRADIENT_XYZ[1] = 0.0 0.0 9.99348 diff --git a/src/shapes/shape_base.cpp b/src/shapes/shape_base.cpp index c33670d..5a0ff9f 100644 --- a/src/shapes/shape_base.cpp +++ b/src/shapes/shape_base.cpp @@ -82,7 +82,7 @@ bool shape::save() // save fov float fov[3] = {m_fov, m_fov, m_fov}; std::vector dims_fov(1, 3); - HighFive::DataSet dataset_fov = file.createDataSet("fov", HighFive::DataSpace(dims_fov)); + HighFive::DataSet dataset_fov = file.createDataSet("fov", HighFive::DataSpace(dims_fov)); dataset_fov.write_raw(fov); return true; } diff --git a/src/simulation_parameters.h b/src/simulation_parameters.h index c2df64f..d2f7181 100644 --- a/src/simulation_parameters.h +++ b/src/simulation_parameters.h @@ -104,7 +104,6 @@ typedef struct simulation_parameters ss<<"T1 = "; for(int i=0; i