simprily_batch.pbs

#!/bin/bash
#PBS -N simprilyB
## Change your group
#PBS -W group_list=mfh
#PBS -q standard
#PBS -J 1-1000
#PBS -l cput=00:05:00
#PBS -l walltime=00:05:00
#PBS -l select=1:ncpus=1:mem=6gb
#PBS -l place=pack:shared
#PBS -j oe


cd $PBS_O_WORKDIR/SimPrily
echo $PBS_O_WORKDIR/SimPrily

ID=${PBS_ARRAY_INDEX}

PBS_ID=$(echo ${PBS_JOBID} | cut -d '[' -f1)
echo "PBS_ID: ${PBS_ID}"

OUT=${PBS_O_WORKDIR}/output/${PBS_ID}

echo "python simprily.py -p examples/eg1/param_file_eg1.txt -m examples/eg1/model_file_eg1.csv -i 1 -o output"
python simprily.py -p examples/eg1/param_file_eg1.txt -m examples/eg1/model_file_eg1.csv -i ${ID} -o ${OUT}