Attribution 4.0 International
-=======================================================================
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-Creative Commons Attribution 4.0 International Public License
-By exercising the Licensed Rights (defined below), You accept and agree to be bound by the terms and conditions of this Creative Commons Attribution 4.0 International Public License (“Public License”). To the extent this Public License may be interpreted as a contract, You are granted the Licensed Rights in consideration of Your acceptance of these terms and conditions, and the Licensor grants You such rights in consideration of benefits the Licensor receives from making the Licensed Material available under these terms and conditions.
-Section 1 – Definitions.
-Adapted Material means material subject to Copyright and Similar Rights that is derived from or based upon the Licensed Material and in which the Licensed Material is translated, altered, arranged, transformed, or otherwise modified in a manner requiring permission under the Copyright and Similar Rights held by the Licensor. For purposes of this Public License, where the Licensed Material is a musical work, performance, or sound recording, Adapted Material is always produced where the Licensed Material is synched in timed relation with a moving image.
Adapter’s License means the license You apply to Your Copyright and Similar Rights in Your contributions to Adapted Material in accordance with the terms and conditions of this Public License.
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Exceptions and Limitations means fair use, fair dealing, and/or any other exception or limitation to Copyright and Similar Rights that applies to Your use of the Licensed Material.
Licensed Material means the artistic or literary work, database, or other material to which the Licensor applied this Public License.
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Share means to provide material to the public by any means or process that requires permission under the Licensed Rights, such as reproduction, public display, public performance, distribution, dissemination, communication, or importation, and to make material available to the public including in ways that members of the public may access the material from a place and at a time individually chosen by them.
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Section 2 – Scope.
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-reproduce and Share the Licensed Material, in whole or in part; and
produce, reproduce, and Share Adapted Material.
Exceptions and Limitations. For the avoidance of doubt, where Exceptions and Limitations apply to Your use, this Public License does not apply, and You do not need to comply with its terms and conditions.
Term. The term of this Public License is specified in Section 6(a).
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-Offer from the Licensor – Licensed Material. Every recipient of the Licensed Material automatically receives an offer from the Licensor to exercise the Licensed Rights under the terms and conditions of this Public License.
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-Moral rights, such as the right of integrity, are not licensed under this Public License, nor are publicity, privacy, and/or other similar personality rights; however, to the extent possible, the Licensor waives and/or agrees not to assert any such rights held by the Licensor to the limited extent necessary to allow You to exercise the Licensed Rights, but not otherwise.
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-retain the following if it is supplied by the Licensor with the Licensed Material:
-identification of the creator(s) of the Licensed Material and any others designated to receive attribution, in any reasonable manner requested by the Licensor (including by pseudonym if designated);
a copyright notice;
a notice that refers to this Public License;
a notice that refers to the disclaimer of warranties;
a URI or hyperlink to the Licensed Material to the extent reasonably practicable;
indicate if You modified the Licensed Material and retain an indication of any previous modifications; and
indicate the Licensed Material is licensed under this Public License, and include the text of, or the URI or hyperlink to, this Public License.
You may satisfy the conditions in Section 3(a)(1) in any reasonable manner based on the medium, means, and context in which You Share the Licensed Material. For example, it may be reasonable to satisfy the conditions by providing a URI or hyperlink to a resource that includes the required information.
If requested by the Licensor, You must remove any of the information required by Section 3(a)(1)(A) to the extent reasonably practicable.
If You Share Adapted Material You produce, the Adapter’s License You apply must not prevent recipients of the Adapted Material from complying with this Public License.
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You must comply with the conditions in Section 3(a) if You Share all or a substantial portion of the contents of the database.
For the avoidance of doubt, this Section 4 supplements and does not replace Your obligations under this Public License where the Licensed Rights include other Copyright and Similar Rights.
-Section 5 – Disclaimer of Warranties and Limitation of Liability.
-UNLESS OTHERWISE SEPARATELY UNDERTAKEN BY THE LICENSOR, TO THE EXTENT POSSIBLE, THE LICENSOR OFFERS THE LICENSED MATERIAL AS-IS AND AS-AVAILABLE, AND MAKES NO REPRESENTATIONS OR WARRANTIES OF ANY KIND CONCERNING THE LICENSED MATERIAL, WHETHER EXPRESS, IMPLIED, STATUTORY, OR OTHER. THIS INCLUDES, WITHOUT LIMITATION, WARRANTIES OF TITLE, MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NON-INFRINGEMENT, ABSENCE OF LATENT OR OTHER DEFECTS, ACCURACY, OR THE PRESENCE OR ABSENCE OF ERRORS, WHETHER OR NOT KNOWN OR DISCOVERABLE. WHERE DISCLAIMERS OF WARRANTIES ARE NOT ALLOWED IN FULL OR IN PART, THIS DISCLAIMER MAY NOT APPLY TO YOU.
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The disclaimer of warranties and limitation of liability provided above shall be interpreted in a manner that, to the extent possible, most closely approximates an absolute disclaimer and waiver of all liability.
Section 6 – Term and Termination.
-This Public License applies for the term of the Copyright and Similar Rights licensed here. However, if You fail to comply with this Public License, then Your rights under this Public License terminate automatically.
Where Your right to use the Licensed Material has terminated under Section 6(a), it reinstates:
-automatically as of the date the violation is cured, provided it is cured within 30 days of Your discovery of the violation; or
upon express reinstatement by the Licensor.
For the avoidance of doubt, this Section 6(b) does not affect any right the Licensor may have to seek remedies for Your violations of this Public License.
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Sections 1, 5, 6, 7, and 8 survive termination of this Public License.
Section 7 – Other Terms and Conditions.
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=======================================================================
-Creative Commons is not a party to its public licenses. Notwithstanding, Creative Commons may elect to apply one of its public licenses to material it publishes and in those instances will be considered the “Licensor.” The text of the Creative Commons public licenses is dedicated to the public domain under the CC0 Public Domain Dedication. Except for the limited purpose of indicating that material is shared under a Creative Commons public license or as otherwise permitted by the Creative Commons policies published at creativecommons.org/policies, Creative Commons does not authorize the use of the trademark “Creative Commons” or any other trademark or logo of Creative Commons without its prior written consent including, without limitation, in connection with any unauthorized modifications to any of its public licenses or any other arrangements, understandings, or agreements concerning use of licensed material. For the avoidance of doubt, this paragraph does not form part of the public licenses.
-Creative Commons may be contacted at creativecommons.org.
- - -Homoudi A (2024). -AquaFortR: Streamlining Atmospheric Science, Oceanography, Climate, and Water Research with Fortran-accelerated R. -R package version 0.1.0, https://AHomoudi.github.io/AquaFortR/. -
-@Manual{,
- title = {AquaFortR: Streamlining Atmospheric Science, Oceanography, Climate, and Water Research with Fortran-accelerated R},
- author = {Ahmed Homoudi},
- year = {2024},
- note = {R package version 0.1.0},
- url = {https://AHomoudi.github.io/AquaFortR/},
-}
- This is a Quarto book.
-To learn more about Quarto books visit https://quarto.org/docs/books.
-1 + 1[1] 2This is a book created from markdown and executable code.
-See Knuth (1984) for additional discussion of literate programming.
-1 + 1[1] 2${missingFields[0]} field.`,
- message: `The items being returned for this search do not include all the required fields. Please ensure that your index items include the ${missingFields[0]} field or use index-fields in your _quarto.yml file to specify the field names.`,
- };
- } else if (missingFields.length > 1) {
- const missingFieldList = missingFields
- .map((field) => {
- return `${field}`;
- })
- .join(", ");
-
- throw {
- name: `Error: Search index is missing the following fields: ${missingFieldList}.`,
- message: `The items being returned for this search do not include all the required fields. Please ensure that your index items includes the following fields: ${missingFieldList}, or use index-fields in your _quarto.yml file to specify the field names.`,
- };
- }
- }
-}
-
-let lastQuery = null;
-function showCopyLink(query, options) {
- const language = options.language;
- lastQuery = query;
- // Insert share icon
- const inputSuffixEl = window.document.body.querySelector(
- ".aa-Form .aa-InputWrapperSuffix"
- );
-
- if (inputSuffixEl) {
- let copyButtonEl = window.document.body.querySelector(
- ".aa-Form .aa-InputWrapperSuffix .aa-CopyButton"
- );
-
- if (copyButtonEl === null) {
- copyButtonEl = window.document.createElement("button");
- copyButtonEl.setAttribute("class", "aa-CopyButton");
- copyButtonEl.setAttribute("type", "button");
- copyButtonEl.setAttribute("title", language["search-copy-link-title"]);
- copyButtonEl.onmousedown = (e) => {
- e.preventDefault();
- e.stopPropagation();
- };
-
- const linkIcon = "bi-clipboard";
- const checkIcon = "bi-check2";
-
- const shareIconEl = window.document.createElement("i");
- shareIconEl.setAttribute("class", `bi ${linkIcon}`);
- copyButtonEl.appendChild(shareIconEl);
- inputSuffixEl.prepend(copyButtonEl);
-
- const clipboard = new window.ClipboardJS(".aa-CopyButton", {
- text: function (_trigger) {
- const copyUrl = new URL(window.location);
- copyUrl.searchParams.set(kQueryArg, lastQuery);
- copyUrl.searchParams.set(kResultsArg, "1");
- return copyUrl.toString();
- },
- });
- clipboard.on("success", function (e) {
- // Focus the input
-
- // button target
- const button = e.trigger;
- const icon = button.querySelector("i.bi");
-
- // flash "checked"
- icon.classList.add(checkIcon);
- icon.classList.remove(linkIcon);
- setTimeout(function () {
- icon.classList.remove(checkIcon);
- icon.classList.add(linkIcon);
- }, 1000);
- });
- }
-
- // If there is a query, show the link icon
- if (copyButtonEl) {
- if (lastQuery && options["copy-button"]) {
- copyButtonEl.style.display = "flex";
- } else {
- copyButtonEl.style.display = "none";
- }
- }
- }
-}
-
-/* Search Index Handling */
-// create the index
-var fuseIndex = undefined;
-async function readSearchData() {
- // Initialize the search index on demand
- if (fuseIndex === undefined) {
- // create fuse index
- const options = {
- keys: [
- { name: "title", weight: 20 },
- { name: "section", weight: 20 },
- { name: "text", weight: 10 },
- ],
- ignoreLocation: true,
- threshold: 0.1,
- };
- const fuse = new window.Fuse([], options);
-
- // fetch the main search.json
- const response = await fetch(offsetURL("search.json"));
- if (response.status == 200) {
- return response.json().then(function (searchDocs) {
- searchDocs.forEach(function (searchDoc) {
- fuse.add(searchDoc);
- });
- fuseIndex = fuse;
- return fuseIndex;
- });
- } else {
- return Promise.reject(
- new Error(
- "Unexpected status from search index request: " + response.status
- )
- );
- }
- }
- return fuseIndex;
-}
-
-function inputElement() {
- return window.document.body.querySelector(".aa-Form .aa-Input");
-}
-
-function focusSearchInput() {
- setTimeout(() => {
- const inputEl = inputElement();
- if (inputEl) {
- inputEl.focus();
- }
- }, 50);
-}
-
-/* Panels */
-const kItemTypeDoc = "document";
-const kItemTypeMore = "document-more";
-const kItemTypeItem = "document-item";
-const kItemTypeError = "error";
-
-function renderItem(
- item,
- createElement,
- state,
- setActiveItemId,
- setContext,
- refresh
-) {
- switch (item.type) {
- case kItemTypeDoc:
- return createDocumentCard(
- createElement,
- "file-richtext",
- item.title,
- item.section,
- item.text,
- item.href
- );
- case kItemTypeMore:
- return createMoreCard(
- createElement,
- item,
- state,
- setActiveItemId,
- setContext,
- refresh
- );
- case kItemTypeItem:
- return createSectionCard(
- createElement,
- item.section,
- item.text,
- item.href
- );
- case kItemTypeError:
- return createErrorCard(createElement, item.title, item.text);
- default:
- return undefined;
- }
-}
-
-function createDocumentCard(createElement, icon, title, section, text, href) {
- const iconEl = createElement("i", {
- class: `bi bi-${icon} search-result-icon`,
- });
- const titleEl = createElement("p", { class: "search-result-title" }, title);
- const titleContainerEl = createElement(
- "div",
- { class: "search-result-title-container" },
- [iconEl, titleEl]
- );
-
- const textEls = [];
- if (section) {
- const sectionEl = createElement(
- "p",
- { class: "search-result-section" },
- section
- );
- textEls.push(sectionEl);
- }
- const descEl = createElement("p", {
- class: "search-result-text",
- dangerouslySetInnerHTML: {
- __html: text,
- },
- });
- textEls.push(descEl);
-
- const textContainerEl = createElement(
- "div",
- { class: "search-result-text-container" },
- textEls
- );
-
- const containerEl = createElement(
- "div",
- {
- class: "search-result-container",
- },
- [titleContainerEl, textContainerEl]
- );
-
- const linkEl = createElement(
- "a",
- {
- href: offsetURL(href),
- class: "search-result-link",
- },
- containerEl
- );
-
- const classes = ["search-result-doc", "search-item"];
- if (!section) {
- classes.push("document-selectable");
- }
-
- return createElement(
- "div",
- {
- class: classes.join(" "),
- },
- linkEl
- );
-}
-
-function createMoreCard(
- createElement,
- item,
- state,
- setActiveItemId,
- setContext,
- refresh
-) {
- const moreCardEl = createElement(
- "div",
- {
- class: "search-result-more search-item",
- onClick: (e) => {
- // Handle expanding the sections by adding the expanded
- // section to the list of expanded sections
- toggleExpanded(item, state, setContext, setActiveItemId, refresh);
- e.stopPropagation();
- },
- },
- item.title
- );
-
- return moreCardEl;
-}
-
-function toggleExpanded(item, state, setContext, setActiveItemId, refresh) {
- const expanded = state.context.expanded || [];
- if (expanded.includes(item.target)) {
- setContext({
- expanded: expanded.filter((target) => target !== item.target),
- });
- } else {
- setContext({ expanded: [...expanded, item.target] });
- }
-
- refresh();
- setActiveItemId(item.__autocomplete_id);
-}
-
-function createSectionCard(createElement, section, text, href) {
- const sectionEl = createSection(createElement, section, text, href);
- return createElement(
- "div",
- {
- class: "search-result-doc-section search-item",
- },
- sectionEl
- );
-}
-
-function createSection(createElement, title, text, href) {
- const descEl = createElement("p", {
- class: "search-result-text",
- dangerouslySetInnerHTML: {
- __html: text,
- },
- });
-
- const titleEl = createElement("p", { class: "search-result-section" }, title);
- const linkEl = createElement(
- "a",
- {
- href: offsetURL(href),
- class: "search-result-link",
- },
- [titleEl, descEl]
- );
- return linkEl;
-}
-
-function createErrorCard(createElement, title, text) {
- const descEl = createElement("p", {
- class: "search-error-text",
- dangerouslySetInnerHTML: {
- __html: text,
- },
- });
-
- const titleEl = createElement("p", {
- class: "search-error-title",
- dangerouslySetInnerHTML: {
- __html: ` ${title}`,
- },
- });
- const errorEl = createElement("div", { class: "search-error" }, [
- titleEl,
- descEl,
- ]);
- return errorEl;
-}
-
-function positionPanel(pos) {
- const panelEl = window.document.querySelector(
- "#quarto-search-results .aa-Panel"
- );
- const inputEl = window.document.querySelector(
- "#quarto-search .aa-Autocomplete"
- );
-
- if (panelEl && inputEl) {
- panelEl.style.top = `${Math.round(panelEl.offsetTop)}px`;
- if (pos === "start") {
- panelEl.style.left = `${Math.round(inputEl.left)}px`;
- } else {
- panelEl.style.right = `${Math.round(inputEl.offsetRight)}px`;
- }
- }
-}
-
-/* Highlighting */
-// highlighting functions
-function highlightMatch(query, text) {
- if (text) {
- const start = text.toLowerCase().indexOf(query.toLowerCase());
- if (start !== -1) {
- const startMark = "";
- const endMark = "";
-
- const end = start + query.length;
- text =
- text.slice(0, start) +
- startMark +
- text.slice(start, end) +
- endMark +
- text.slice(end);
- const startInfo = clipStart(text, start);
- const endInfo = clipEnd(
- text,
- startInfo.position + startMark.length + endMark.length
- );
- text =
- startInfo.prefix +
- text.slice(startInfo.position, endInfo.position) +
- endInfo.suffix;
-
- return text;
- } else {
- return text;
- }
- } else {
- return text;
- }
-}
-
-function clipStart(text, pos) {
- const clipStart = pos - 50;
- if (clipStart < 0) {
- // This will just return the start of the string
- return {
- position: 0,
- prefix: "",
- };
- } else {
- // We're clipping before the start of the string, walk backwards to the first space.
- const spacePos = findSpace(text, pos, -1);
- return {
- position: spacePos.position,
- prefix: "",
- };
- }
-}
-
-function clipEnd(text, pos) {
- const clipEnd = pos + 200;
- if (clipEnd > text.length) {
- return {
- position: text.length,
- suffix: "",
- };
- } else {
- const spacePos = findSpace(text, clipEnd, 1);
- return {
- position: spacePos.position,
- suffix: spacePos.clipped ? "…" : "",
- };
- }
-}
-
-function findSpace(text, start, step) {
- let stepPos = start;
- while (stepPos > -1 && stepPos < text.length) {
- const char = text[stepPos];
- if (char === " " || char === "," || char === ":") {
- return {
- position: step === 1 ? stepPos : stepPos - step,
- clipped: stepPos > 1 && stepPos < text.length,
- };
- }
- stepPos = stepPos + step;
- }
-
- return {
- position: stepPos - step,
- clipped: false,
- };
-}
-
-// removes highlighting as implemented by the mark tag
-function clearHighlight(searchterm, el) {
- const childNodes = el.childNodes;
- for (let i = childNodes.length - 1; i >= 0; i--) {
- const node = childNodes[i];
- if (node.nodeType === Node.ELEMENT_NODE) {
- if (
- node.tagName === "MARK" &&
- node.innerText.toLowerCase() === searchterm.toLowerCase()
- ) {
- el.replaceChild(document.createTextNode(node.innerText), node);
- } else {
- clearHighlight(searchterm, node);
- }
- }
- }
-}
-
-function escapeRegExp(string) {
- return string.replace(/[.*+?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string
-}
-
-// highlight matches
-function highlight(term, el) {
- const termRegex = new RegExp(term, "ig");
- const childNodes = el.childNodes;
-
- // walk back to front avoid mutating elements in front of us
- for (let i = childNodes.length - 1; i >= 0; i--) {
- const node = childNodes[i];
-
- if (node.nodeType === Node.TEXT_NODE) {
- // Search text nodes for text to highlight
- const text = node.nodeValue;
-
- let startIndex = 0;
- let matchIndex = text.search(termRegex);
- if (matchIndex > -1) {
- const markFragment = document.createDocumentFragment();
- while (matchIndex > -1) {
- const prefix = text.slice(startIndex, matchIndex);
- markFragment.appendChild(document.createTextNode(prefix));
-
- const mark = document.createElement("mark");
- mark.appendChild(
- document.createTextNode(
- text.slice(matchIndex, matchIndex + term.length)
- )
- );
- markFragment.appendChild(mark);
-
- startIndex = matchIndex + term.length;
- matchIndex = text.slice(startIndex).search(new RegExp(term, "ig"));
- if (matchIndex > -1) {
- matchIndex = startIndex + matchIndex;
- }
- }
- if (startIndex < text.length) {
- markFragment.appendChild(
- document.createTextNode(text.slice(startIndex, text.length))
- );
- }
-
- el.replaceChild(markFragment, node);
- }
- } else if (node.nodeType === Node.ELEMENT_NODE) {
- // recurse through elements
- highlight(term, node);
- }
- }
-}
-
-/* Link Handling */
-// get the offset from this page for a given site root relative url
-function offsetURL(url) {
- var offset = getMeta("quarto:offset");
- return offset ? offset + url : url;
-}
-
-// read a meta tag value
-function getMeta(metaName) {
- var metas = window.document.getElementsByTagName("meta");
- for (let i = 0; i < metas.length; i++) {
- if (metas[i].getAttribute("name") === metaName) {
- return metas[i].getAttribute("content");
- }
- }
- return "";
-}
-
-function algoliaSearch(query, limit, algoliaOptions) {
- const { getAlgoliaResults } = window["@algolia/autocomplete-preset-algolia"];
-
- const applicationId = algoliaOptions["application-id"];
- const searchOnlyApiKey = algoliaOptions["search-only-api-key"];
- const indexName = algoliaOptions["index-name"];
- const indexFields = algoliaOptions["index-fields"];
- const searchClient = window.algoliasearch(applicationId, searchOnlyApiKey);
- const searchParams = algoliaOptions["params"];
- const searchAnalytics = !!algoliaOptions["analytics-events"];
-
- return getAlgoliaResults({
- searchClient,
- queries: [
- {
- indexName: indexName,
- query,
- params: {
- hitsPerPage: limit,
- clickAnalytics: searchAnalytics,
- ...searchParams,
- },
- },
- ],
- transformResponse: (response) => {
- if (!indexFields) {
- return response.hits.map((hit) => {
- return hit.map((item) => {
- return {
- ...item,
- text: highlightMatch(query, item.text),
- };
- });
- });
- } else {
- const remappedHits = response.hits.map((hit) => {
- return hit.map((item) => {
- const newItem = { ...item };
- ["href", "section", "title", "text"].forEach((keyName) => {
- const mappedName = indexFields[keyName];
- if (
- mappedName &&
- item[mappedName] !== undefined &&
- mappedName !== keyName
- ) {
- newItem[keyName] = item[mappedName];
- delete newItem[mappedName];
- }
- });
- newItem.text = highlightMatch(query, newItem.text);
- return newItem;
- });
- });
- return remappedHits;
- }
- },
- });
-}
-
-function fuseSearch(query, fuse, fuseOptions) {
- return fuse.search(query, fuseOptions).map((result) => {
- const addParam = (url, name, value) => {
- const anchorParts = url.split("#");
- const baseUrl = anchorParts[0];
- const sep = baseUrl.search("\\?") > 0 ? "&" : "?";
- anchorParts[0] = baseUrl + sep + name + "=" + value;
- return anchorParts.join("#");
- };
-
- return {
- title: result.item.title,
- section: result.item.section,
- href: addParam(result.item.href, kQueryArg, query),
- text: highlightMatch(query, result.item.text),
- };
- });
-}
diff --git a/book/summary.html b/book/summary.html
deleted file mode 100644
index 69fe3e0..0000000
--- a/book/summary.html
+++ /dev/null
@@ -1,448 +0,0 @@
-
-
-
-
-
-
-
-
-
-In summary, this book has no content whatsoever.
-1 + 1[1] 2