@@ -36,28 +36,10 @@ def example_dft_md_reftraj(cp2k_code):
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)
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# Trajectory.
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- < << << << HEAD
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steps = 5
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positions = np .array ([[[2 ,2 ,2.73 + 0.05 * random .random ()],[2 ,2 ,2 ]] for i in range (steps )])
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cells = np .array ([[[4 ,0 ,0 ],[0 ,4 ,0 ],[0 ,0 ,4.75 + 0.05 * random .random ()]]for i in range (steps )])
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symbols = ['H' ,'H' ]
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- == == == =
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- positions = np .array (
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- [
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- [[2 , 2 , 2.73 ], [2 , 2 , 2.0 ]],
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- [[2 , 2 , 2.74 ], [2 , 2 , 2.0 ]],
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- [[2 , 2 , 2.75 ], [2 , 2 , 2.0 ]],
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- ]
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- )
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- cells = np .array (
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- [
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- [[4 , 0 , 0 ], [0 , 4 , 0 ], [0 , 0 , 4.75 ]],
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- [[4.4 , 0 , 0 ], [0 , 4.2 , 0 ], [0 , 0 , 4.76 ]],
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- [[4 , 0 , 0 ], [0 , 4.1 , 0 ], [0 , 0 , 4.75 ]],
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- ]
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- )
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- symbols = ["H" , "H" ]
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- >> >> >> > 0579 f0ce4b6ee754292a941572730fae741122cd
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trajectory = TrajectoryData ()
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trajectory .set_trajectory (symbols , positions , cells = cells )
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@@ -83,7 +65,6 @@ def example_dft_md_reftraj(cp2k_code):
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"MOTION" : {
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"MD" : {
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"ENSEMBLE" : "REFTRAJ" ,
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- << << << < HEAD
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"STEPS" : steps ,
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"REFTRAJ" :{
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'FIRST_SNAPSHOT' :1 ,
@@ -93,17 +74,6 @@ def example_dft_md_reftraj(cp2k_code):
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'CELL_FILE_NAME' :'reftraj.cell' ,
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'VARIABLE_VOLUME' :'.TRUE.'
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},
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- == == == =
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- "STEPS" : 3 ,
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- "REFTRAJ" : {
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- "FIRST_SNAPSHOT" : 1 ,
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- "LAST_SNAPSHOT" : 3 ,
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- "EVAL_FORCES" : ".TRUE." ,
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- "TRAJ_FILE_NAME" : "trajectory.xyz" ,
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- "CELL_FILE_NAME" : "reftraj.cell" ,
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- "VARIABLE_VOLUME" : ".TRUE." ,
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- },
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- >> >> >> > 0579 f0ce4b6ee754292a941572730fae741122cd
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},
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"PRINT" : {
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"RESTART" : {
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