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examples/single_calculations/example_dft_md_reftraj.py

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@@ -36,28 +36,10 @@ def example_dft_md_reftraj(cp2k_code):
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)
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# Trajectory.
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<<<<<<< HEAD
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steps=5
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positions = np.array([[[2,2,2.73+0.05*random.random()],[2,2,2]] for i in range(steps)])
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cells = np.array([[[4,0,0],[0,4,0],[0,0,4.75+0.05*random.random()]]for i in range(steps)])
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symbols=['H','H']
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=======
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positions = np.array(
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[
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[[2, 2, 2.73], [2, 2, 2.0]],
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[[2, 2, 2.74], [2, 2, 2.0]],
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[[2, 2, 2.75], [2, 2, 2.0]],
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]
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)
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cells = np.array(
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[
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[[4, 0, 0], [0, 4, 0], [0, 0, 4.75]],
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[[4.4, 0, 0], [0, 4.2, 0], [0, 0, 4.76]],
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[[4, 0, 0], [0, 4.1, 0], [0, 0, 4.75]],
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]
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)
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symbols = ["H", "H"]
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>>>>>>> 0579f0ce4b6ee754292a941572730fae741122cd
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trajectory = TrajectoryData()
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trajectory.set_trajectory(symbols, positions, cells=cells)
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@@ -83,7 +65,6 @@ def example_dft_md_reftraj(cp2k_code):
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"MOTION": {
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"MD": {
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"ENSEMBLE": "REFTRAJ",
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<<<<<<< HEAD
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"STEPS": steps,
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"REFTRAJ":{
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'FIRST_SNAPSHOT':1,
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'CELL_FILE_NAME':'reftraj.cell',
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'VARIABLE_VOLUME':'.TRUE.'
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},
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=======
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"STEPS": 3,
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"REFTRAJ": {
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"FIRST_SNAPSHOT": 1,
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"LAST_SNAPSHOT": 3,
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"EVAL_FORCES": ".TRUE.",
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"TRAJ_FILE_NAME": "trajectory.xyz",
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"CELL_FILE_NAME": "reftraj.cell",
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"VARIABLE_VOLUME": ".TRUE.",
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},
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>>>>>>> 0579f0ce4b6ee754292a941572730fae741122cd
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},
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"PRINT": {
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"RESTART": {

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