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germline_set_view.html
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{% extends "base.html" %}
{% block pagetitle %} Germline Set {{ name }}{% endblock %}
{% block c_body %}
<div>
<ul class="nav nav-tabs" role="tablist" id="myTab">
<li role="presentation" class="active"><a href="#download" aria-controls="download" role="tab" data-toggle="tab" id="tab-download">Download</a></li>
<li role="presentation"><a href="#det" aria-controls="det" role="tab" data-toggle="tab" id="tab-det">Details</a></li>
<li role="presentation"><a href="#ack" aria-controls="ack" role="tab" data-toggle="tab" id="tab-ack">Acknowledgements</a></li>
<li role="presentation"><a href="#history" aria-controls="history" role="tab" data-toggle="tab" id="tab-history">History</a></li>
<li role="presentation"><a href="#versions" aria-controls="versions" role="tab" data-toggle="tab" id="tab-versions">Versions</a></li>
</ul>
{{ form.hidden_tag() }}
<div class="tab-content">
<div role="tabpanel" class="tab-pane active" id="download">
<div class="row">
{% if extended %}
<h3 class="col-sm-offset-1 col-sm-11">Download Reference Set (Recommended for AIRR-seq analysis)</h3>
<div class="row">
<div class="form-group">
<div class="col-sm-offset-1 col-sm-3">
<a href="{{ url_for('download_germline_set', varargs=dl_args + '/airr_ex') }}" id="dl-airr" class="btn btn-primary">AIRR Format (JSON)</a>
</div>
</div>
<div class="form-group">
<div class="col-sm-3">
<a href="{{ url_for('download_germline_set', varargs=dl_args + '/ungapped_ex') }}" id="dl-ungapped" class="btn btn-primary">Ungapped Sequences (FASTA)</a>
</div>
</div>
<div class="form-group">
<div class="col-sm-3">
<a href="{{ url_for('download_germline_set', varargs=dl_args + '/gapped_ex') }}" id="dl-gapped" class="btn btn-primary">Gapped Sequences (FASTA)</a>
</div>
</div>
</div>
{% endif %}
{% if extended %}
<h3 class="col-sm-offset-1 col-sm-11">Download Source Set (Not recommended for AIRR-seq analysis)</h3>
{% else %}
<h3 class="col-sm-offset-1 col-sm-11">Download</h3>
{% endif %}
<div class="form-group">
<div class="col-sm-offset-1 col-sm-3">
<a href="{{ url_for('download_germline_set', varargs=dl_args + '/airr') }}" id="dl-airr" class="btn btn-primary">AIRR Format (JSON)</a>
</div>
</div>
<div class="form-group">
<div class="col-sm-3">
<a href="{{ url_for('download_germline_set', varargs=dl_args + '/ungapped') }}" id="dl-ungapped" class="btn btn-primary">Ungapped Sequences (FASTA)</a>
</div>
</div>
<div class="form-group">
<div class="col-sm-3">
<a href="{{ url_for('download_germline_set', varargs=dl_args + '/gapped') }}" id="dl-gapped" class="btn btn-primary">Gapped Sequences (FASTA)</a>
</div>
</div>
</div>
{% if notes %}
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">Notes</h3>
<div class="col-sm-offset-1 col-sm-11">
<p>{{ notes | textile_filter }}</p>
</div>
</div>
{% endif %}
{% if supplementary_files %}
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">Supplementary Files</h3>
<div class="col-sm-8 col-sm-offset-2">
{{ tables['attachments'] }}
</div>
</div>
{% endif %}
</div>
<div role="tabpanel" class="tab-pane" id="det">
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">Details</h3>
<div class="col-sm-offset-1 col-sm-11">
{{ tables['description'] }}
</div>
</div>
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">Included Sequences</h3>
<p class="col-sm-offset-1 col-sm-11">The download in Excel or CSV format includes sequences, flanking regions and additional detail.</p>
<div class="col-sm-10 col-sm-offset-1">
<div class="form-group">
{{ tables['genes'] }}
</div>
</div>
</div>
</div>
<div role="tabpanel" class="tab-pane" id="ack">
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">Acknowledgements</h3>
<p class="col-sm-offset-1 col-sm-11">Individuals acknowledged as contributing to this sequence:</p>
<div class="col-sm-10 col-sm-offset-1">
{{ tables['acknowledgements'] }}
</div>
</div>
</div>
<div role="tabpanel" class="tab-pane" id="history">
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">History</h3>
<p class="col-sm-offset-1 col-sm-10">History logs the times and reasons for the publication of each version of this germline set. Key changes are noted.
For detailed changes, click on the link to the sequence.</p>
<div class="col-sm-10 col-sm-offset-1">
{% for t in tables['history'] %}
{{ t }}
{% endfor %}
</div>
</div>
{% if changes != '' %}
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">Changes from published version</h3>
<div class="col-sm-10 col-sm-offset-1">
{{ changes }}
</div>
</div>
{% endif %}
</div>
<div role="tabpanel" class="tab-pane" id="versions">
<div class="row">
<h3 class="col-sm-offset-1 col-sm-11">Versions</h3>
<p class="col-sm-offset-1 col-sm-10">All published versions of this germline set.</p>
<div class="col-sm-10 col-sm-offset-1">
{{ tables['versions'] }}
</div>
</div>
</div>
</div>
</div>
{% endblock %}
{% block scripts %}
{{ super() }}
<script src="/static/script/helpers.js"></script>
<script>
$(document).ready(function() {
init_datatable();
} );
function range(size, startAt = 0) {
return [...Array(size).keys()].map(i => i + startAt);
}
function init_datatable() {
if(!$.fn.DataTable.isDataTable($("#{{ tables['genes'].table_id }}"))) {
console.log("initialising table");
$("#{{ tables['genes'].table_id }}").DataTable({
dom: 'Blfrtip',
"paging": true,
"searching": true,
"select": false,
"info": false,
"lengthMenu": [ 25, 100, 500, 5000 ],
"colReorder": true,
"columnDefs": [
{"visible": false, "targets": range(16, -16)},
{"width": "0px", "targets": range(16, -16)},
],
"buttons": [
"excel", "csv"
]
});
}
}
</script>
{% endblock %}