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One more round of testing: T1D benchmark test #40

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bcorrie opened this issue May 1, 2024 · 1 comment
Open

One more round of testing: T1D benchmark test #40

bcorrie opened this issue May 1, 2024 · 1 comment

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@bcorrie
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bcorrie commented May 1, 2024

Select T1D subjects, run repcred on scaled up data sets of:

  • ~100 sequences, DOI:10.1073/pnas.2107208118,nPOD6472,nPOD6472_CD4_beta,isletofLangerhans,TRB, Success
  • ~1000 sequences, DOI:10.1172/JCI.insight.88242,6266,6266_blood_CD4+CD127–CD25+ Treg,blood,TRB, Success
  • ~10000 sequences, DOI:10.1172/JCI.insight.88242,6207,6207_spleen_CD4+CD127–CD25+ Treg,spleen,TRB, Success
  • ~100000 sequences, DOI:10.21417/AMM2022JCII,70700,310298,buffycoat,TRB, Success
  • ~1000000 sequences, DOI:10.21417/B7C88S,T1D14,T1D14_TN,blood,TRB, Success

Again, all successful, so I think I will stop running these tests...

@bcorrie
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bcorrie commented May 1, 2024

Again, you can close this issue, I just wanted to report I had done another round of testing and it all worked.

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