DEXSeq_comparison.R -- request more instrumentation output

[SolKatzman]

junctionCounts version 1.0.0

The infer_pairwise_events.py program provides running timestamps of progress.

It would be good if the DEXSeq_comparison R script did the same.

This would help in determining how various options and datasets affect the performance of the program.

In addition, to help with debugging, it would be very helpful if the program printed out a "head()" function after each R object is created or modified. Simple objects just need a single head() call. For complex objects, a summary printout and perhaps a head() call for some lower level sub-objects would probably be useful. For arrays, a dim() call output would also be very useful. Similarly, for vectors, length() helps.

Note: setting options() for wide output prevents too much wrap around.

Thanks for you attention,

Sol Katzman
UC Santa Cruz Genomics Institute.