diff --git a/DESCRIPTION b/DESCRIPTION index 8df91e4..313204e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: phenoptrReports Title: Create reports using Phenoptics data -Version: 0.2.4.9000 -Date: 2019-08-07 +Version: 0.2.5 +Date: 2019-10-22 Authors@R: c( person("Kent S", "Johnson", role = c("aut", "cre"), email = "kjohnson@akoyabio.com"), diff --git a/NEWS.md b/NEWS.md index f0d3ef2..70bf6a0 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,5 @@ -# phenoptrReports 0.2.4.9000 +# phenoptrReports 0.2.5 +**2019-10-22** Analysis addin: - Reverse the y-axis of heatmaps so that the identity runs diff --git a/docs/404.html b/docs/404.html new file mode 100644 index 0000000..57eda33 --- /dev/null +++ b/docs/404.html @@ -0,0 +1,164 @@ + + + + + + + + +Page not found (404) • phenoptrReports + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + + +
+ +
+
+
+

Page not found (404)

+
+ +Content not found. Please use links in the navbar. + +
+ +
+ + + + +
+ + + + + + + + diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 3e1ef8b..0e996de 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -8,21 +8,25 @@ License • phenoptrReports + + - + + - - + + + @@ -30,10 +34,12 @@ + + @@ -44,6 +50,7 @@ + @@ -60,7 +67,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -97,7 +104,6 @@ Reference - - @@ -188,17 +219,20 @@

+ + diff --git a/docs/articles/unmixing_quality_report.html b/docs/articles/unmixing_quality_report.html index 1fc269c..4a801a3 100644 --- a/docs/articles/unmixing_quality_report.html +++ b/docs/articles/unmixing_quality_report.html @@ -7,8 +7,9 @@ Unmixing quality report • phenoptrReports - - + + + @@ -30,7 +31,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -91,13 +92,14 @@ +

Unmixing quality report

Kent Johnson

-

2019-08-07

+

2019-10-22

Source: vignettes/unmixing_quality_report.Rmd @@ -145,6 +147,7 @@

+ diff --git a/docs/authors.html b/docs/authors.html index ce252ec..3f70041 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -8,21 +8,25 @@ Authors • phenoptrReports + + - + + - - + + + @@ -30,10 +34,12 @@ + + @@ -44,6 +50,7 @@ + @@ -60,7 +67,7 @@ phenoptrReports - 0.2.4 + 0.2.5
@@ -97,7 +104,6 @@ Reference -
+
@@ -148,19 +155,23 @@

Authors

+ + + diff --git a/docs/index.html b/docs/index.html index 7e006c6..3a28816 100644 --- a/docs/index.html +++ b/docs/index.html @@ -7,8 +7,9 @@ Create reports using Phenoptics data • phenoptrReports - - + + + @@ -30,7 +31,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -91,6 +92,7 @@ +
@@ -110,7 +112,7 @@

The analysis apps in phenoptrReports run as “Addins” to the RStudio IDE, which must also be installed.

phenoptrReports uses the Akoya Biosciences phenoptr package for much of its functionality. Please follow the phenoptr installation instructions, including the optional installations, before installing phenoptrReports.

Next, install phenoptrReports from GitHub. In the RStudio console, copy and paste or type this command:

-
devtools::install_github("akoyabio/phenoptrReports")
+
devtools::install_github("akoyabio/phenoptrReports")

@@ -203,17 +205,20 @@

Developers

+

Developed by Kent S Johnson.

-

Site built with pkgdown 1.3.0.

+

Site built with pkgdown 1.4.1.

+
+ diff --git a/docs/news/index.html b/docs/news/index.html index 68f3808..f088dd1 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -8,21 +8,25 @@ Changelog • phenoptrReports + + - + + - - + + + @@ -30,10 +34,12 @@ + + @@ -44,6 +50,7 @@ + @@ -60,7 +67,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -97,7 +104,6 @@ Reference - - + + + diff --git a/docs/reference/addin_20_consolidate.html b/docs/reference/addin_20_consolidate.html index ebb28ba..5bf3534 100644 --- a/docs/reference/addin_20_consolidate.html +++ b/docs/reference/addin_20_consolidate.html @@ -8,21 +8,25 @@ Consolidate and summarize cell seg data files — addin_20_consolidate • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/addin_30_analysis_app.html b/docs/reference/addin_30_analysis_app.html index a91eb47..7b44067 100644 --- a/docs/reference/addin_30_analysis_app.html +++ b/docs/reference/addin_30_analysis_app.html @@ -8,21 +8,25 @@ Run the Analysis app — addin_30_analysis_app • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/addin_35_spatial_map_viewer.html b/docs/reference/addin_35_spatial_map_viewer.html index 94a590c..ea329ea 100644 --- a/docs/reference/addin_35_spatial_map_viewer.html +++ b/docs/reference/addin_35_spatial_map_viewer.html @@ -8,21 +8,25 @@ Spatial map viewer addin — addin_35_spatial_map_viewer • phenoptrReports + + - + + - - + + + @@ -30,16 +34,17 @@ - - + + + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/addin_40_unmixing_quality.html b/docs/reference/addin_40_unmixing_quality.html index f6f5ade..56c01b9 100644 --- a/docs/reference/addin_40_unmixing_quality.html +++ b/docs/reference/addin_40_unmixing_quality.html @@ -8,21 +8,25 @@ Generate an unmixing quality (crosstalk) report for a selected export folder. — addin_40_unmixing_quality • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/addin_50_component_levels.html b/docs/reference/addin_50_component_levels.html index d34d895..d7fd740 100644 --- a/docs/reference/addin_50_component_levels.html +++ b/docs/reference/addin_50_component_levels.html @@ -8,21 +8,25 @@ Generate a component levels report for a selected export folder. — addin_50_component_levels • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/choose_directory.html b/docs/reference/choose_directory.html index 6830750..a6fadf6 100644 --- a/docs/reference/choose_directory.html +++ b/docs/reference/choose_directory.html @@ -8,21 +8,25 @@ Cross-platform choose directory function. — choose_directory • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/choose_files.html b/docs/reference/choose_files.html index 1f7b1ce..c28a7e3 100644 --- a/docs/reference/choose_files.html +++ b/docs/reference/choose_files.html @@ -8,21 +8,25 @@ Cross-platform choose files function — choose_files • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/component_levels_report.html b/docs/reference/component_levels_report.html index 4e382fb..156a6a2 100644 --- a/docs/reference/component_levels_report.html +++ b/docs/reference/component_levels_report.html @@ -8,21 +8,25 @@ Create a component levels report for multiplex samples — component_levels_report • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/compute_density_from_cell_summary.html b/docs/reference/compute_density_from_cell_summary.html index 2fcfedd..e626547 100644 --- a/docs/reference/compute_density_from_cell_summary.html +++ b/docs/reference/compute_density_from_cell_summary.html @@ -8,21 +8,25 @@ Compute cell densities from counts and tissue area — compute_density_from_cell_summary • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/compute_density_from_table.html b/docs/reference/compute_density_from_table.html index 59541cb..7c73266 100644 --- a/docs/reference/compute_density_from_table.html +++ b/docs/reference/compute_density_from_table.html @@ -8,21 +8,25 @@ Compute cell densities from counts and tissue area — compute_density_from_table • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/compute_h_score.html b/docs/reference/compute_h_score.html index 2418cd6..c27996f 100644 --- a/docs/reference/compute_h_score.html +++ b/docs/reference/compute_h_score.html @@ -8,21 +8,25 @@ Compute H-Score for a single marker aggregated by <code>.by</code> — compute_h_score • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/compute_h_score_from_score_data.html b/docs/reference/compute_h_score_from_score_data.html index b5d3a6a..5a4aea8 100644 --- a/docs/reference/compute_h_score_from_score_data.html +++ b/docs/reference/compute_h_score_from_score_data.html @@ -8,21 +8,25 @@ Compute H-Score based on parameters in a score data file — compute_h_score_from_score_data • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/compute_mean_expression.html b/docs/reference/compute_mean_expression.html index 1763d73..01a5b95 100644 --- a/docs/reference/compute_mean_expression.html +++ b/docs/reference/compute_mean_expression.html @@ -8,21 +8,25 @@ Compute mean expression of cells for a single phenotype and marker. — compute_mean_expression • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -39,6 +43,7 @@ + @@ -49,6 +54,7 @@ + @@ -65,7 +71,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -102,7 +108,6 @@ Reference - + + + diff --git a/docs/reference/compute_mean_expression_many.html b/docs/reference/compute_mean_expression_many.html index d04d701..16ba5eb 100644 --- a/docs/reference/compute_mean_expression_many.html +++ b/docs/reference/compute_mean_expression_many.html @@ -8,21 +8,25 @@ Compute mean expression of cells for multiple phenotypes and markers. — compute_mean_expression_many • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/compute_positivity.html b/docs/reference/compute_positivity.html index e2ffb9f..fee34b9 100644 --- a/docs/reference/compute_positivity.html +++ b/docs/reference/compute_positivity.html @@ -8,21 +8,25 @@ Compute positivity of a single phenotype — compute_positivity • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/compute_positivity_many.html b/docs/reference/compute_positivity_many.html index 1481625..bf72fd1 100644 --- a/docs/reference/compute_positivity_many.html +++ b/docs/reference/compute_positivity_many.html @@ -8,21 +8,25 @@ Compute positivity of multiple phenotypes — compute_positivity_many • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/consolidate_and_summarize_cell_seg_data.html b/docs/reference/consolidate_and_summarize_cell_seg_data.html index e9341e1..e44253f 100644 --- a/docs/reference/consolidate_and_summarize_cell_seg_data.html +++ b/docs/reference/consolidate_and_summarize_cell_seg_data.html @@ -9,21 +9,25 @@ Consolidate cell seg data files from parallel projects and create summary reports — consolidate_and_summarize_cell_seg_data • phenoptrReports + + - + + - - + + + @@ -31,15 +35,17 @@ + - - + @@ -50,6 +56,7 @@ + @@ -66,7 +73,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +110,6 @@ Reference - + + + diff --git a/docs/reference/count_phenotypes.html b/docs/reference/count_phenotypes.html index 58409b7..b91d205 100644 --- a/docs/reference/count_phenotypes.html +++ b/docs/reference/count_phenotypes.html @@ -8,21 +8,25 @@ Count phenotypes per slide and tissue category — count_phenotypes • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -39,6 +43,7 @@ + @@ -49,6 +54,7 @@ + @@ -65,7 +71,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -102,7 +108,6 @@ Reference - + + + diff --git a/docs/reference/count_within_summary.html b/docs/reference/count_within_summary.html index 04bdea4..711260c 100644 --- a/docs/reference/count_within_summary.html +++ b/docs/reference/count_within_summary.html @@ -8,21 +8,25 @@ Summarize "count within" distances — count_within_summary • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/counts_to_percents.html b/docs/reference/counts_to_percents.html index 7656417..c8c51df 100644 --- a/docs/reference/counts_to_percents.html +++ b/docs/reference/counts_to_percents.html @@ -8,21 +8,25 @@ Convert a count table to fractional percents — counts_to_percents • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -39,6 +43,7 @@ + @@ -49,6 +54,7 @@ + @@ -65,7 +71,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -102,7 +108,6 @@ Reference - + + + diff --git a/docs/reference/index.html b/docs/reference/index.html index 0f1e5bd..353eb12 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -8,21 +8,25 @@ Function reference • phenoptrReports + + - + + - - + + + @@ -30,10 +34,12 @@ + + @@ -44,6 +50,7 @@ + @@ -60,7 +67,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -97,7 +104,6 @@ Reference - - + + + diff --git a/docs/reference/nearest_neighbor_map.html b/docs/reference/nearest_neighbor_map.html index 7eb65a5..5a8b612 100644 --- a/docs/reference/nearest_neighbor_map.html +++ b/docs/reference/nearest_neighbor_map.html @@ -8,21 +8,25 @@ Make a nearest neighbor map for a single field — nearest_neighbor_map • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - - + + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/nearest_neighbor_summary.html b/docs/reference/nearest_neighbor_summary.html index 96f22ce..d2432f4 100644 --- a/docs/reference/nearest_neighbor_summary.html +++ b/docs/reference/nearest_neighbor_summary.html @@ -8,21 +8,25 @@ Summarize nearest neighbor distances — nearest_neighbor_summary • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/order_by_slide_and_tissue_category.html b/docs/reference/order_by_slide_and_tissue_category.html index 563d5ab..e9d8535 100644 --- a/docs/reference/order_by_slide_and_tissue_category.html +++ b/docs/reference/order_by_slide_and_tissue_category.html @@ -10,21 +10,25 @@ categories in the given order and the "Total" category in the proper place. — order_by_slide_and_tissue_category • phenoptrReports + + - + + - - + + + @@ -32,10 +36,10 @@ + - @@ -43,6 +47,7 @@ + @@ -53,6 +58,7 @@ + @@ -69,7 +75,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -106,7 +112,6 @@ Reference - + + + diff --git a/docs/reference/spatial_map_viewer.html b/docs/reference/spatial_map_viewer.html index e10c4b9..6352ac3 100644 --- a/docs/reference/spatial_map_viewer.html +++ b/docs/reference/spatial_map_viewer.html @@ -9,21 +9,25 @@ Run the spatial map viewer with the given data file and export directory. — spatial_map_viewer • phenoptrReports + + - + + - - + + + @@ -31,15 +35,16 @@ + - + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/split_phenotypes.html b/docs/reference/split_phenotypes.html index c4d7526..cb19cc0 100644 --- a/docs/reference/split_phenotypes.html +++ b/docs/reference/split_phenotypes.html @@ -8,21 +8,25 @@ Split a phenotype column — split_phenotypes • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/unmixing_quality_report.html b/docs/reference/unmixing_quality_report.html index 8ba633d..61bbdb2 100644 --- a/docs/reference/unmixing_quality_report.html +++ b/docs/reference/unmixing_quality_report.html @@ -8,21 +8,25 @@ Create an unmixing quality report for simplex samples — unmixing_quality_report • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -50,6 +55,7 @@ + @@ -66,7 +72,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -103,7 +109,6 @@ Reference - + + + diff --git a/docs/reference/upset_plot.html b/docs/reference/upset_plot.html index 17210e3..f373934 100644 --- a/docs/reference/upset_plot.html +++ b/docs/reference/upset_plot.html @@ -8,21 +8,25 @@ Create an UpSet plot showing the phenotype combinations present in data. — upset_plot • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/write_count_within_sheet.html b/docs/reference/write_count_within_sheet.html index b4821fd..a5d6e6a 100644 --- a/docs/reference/write_count_within_sheet.html +++ b/docs/reference/write_count_within_sheet.html @@ -8,21 +8,25 @@ Write a "count within" summary to an Excel workbook — write_count_within_sheet • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/write_counts_sheet.html b/docs/reference/write_counts_sheet.html index 2b5618f..8ca32e7 100644 --- a/docs/reference/write_counts_sheet.html +++ b/docs/reference/write_counts_sheet.html @@ -8,21 +8,25 @@ Write a cell counts table to an Excel workbook — write_counts_sheet • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/write_density_sheet.html b/docs/reference/write_density_sheet.html index 3ae4077..b71d629 100644 --- a/docs/reference/write_density_sheet.html +++ b/docs/reference/write_density_sheet.html @@ -8,21 +8,25 @@ Write a density table to an Excel workbook — write_density_sheet • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/write_expression_sheet.html b/docs/reference/write_expression_sheet.html index f221a2c..1f14ee6 100644 --- a/docs/reference/write_expression_sheet.html +++ b/docs/reference/write_expression_sheet.html @@ -8,21 +8,25 @@ Write an expression table to an Excel workbook — write_expression_sheet • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/write_h_score_sheet.html b/docs/reference/write_h_score_sheet.html index 68d6420..cc53adf 100644 --- a/docs/reference/write_h_score_sheet.html +++ b/docs/reference/write_h_score_sheet.html @@ -8,21 +8,25 @@ Write an H-Score table to an Excel workbook — write_h_score_sheet • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/write_nearest_neighbor_summary_sheet.html b/docs/reference/write_nearest_neighbor_summary_sheet.html index b706373..faeee01 100644 --- a/docs/reference/write_nearest_neighbor_summary_sheet.html +++ b/docs/reference/write_nearest_neighbor_summary_sheet.html @@ -8,21 +8,25 @@ Write a nearest neighbor summary to an Excel workbook — write_nearest_neighbor_summary_sheet • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/write_percents_sheet.html b/docs/reference/write_percents_sheet.html index 301b9cc..e26b52f 100644 --- a/docs/reference/write_percents_sheet.html +++ b/docs/reference/write_percents_sheet.html @@ -8,21 +8,25 @@ Write a cell percent table to an Excel workbook — write_percents_sheet • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/write_plot_sheet.html b/docs/reference/write_plot_sheet.html index cbc3b92..50588ff 100644 --- a/docs/reference/write_plot_sheet.html +++ b/docs/reference/write_plot_sheet.html @@ -8,21 +8,25 @@ Write a plot to an Excel workbook — write_plot_sheet • phenoptrReports + + - + + - - + + + @@ -30,13 +34,14 @@ - + + @@ -47,6 +52,7 @@ + @@ -63,7 +69,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -100,7 +106,6 @@ Reference - + + + diff --git a/docs/reference/write_session_info.html b/docs/reference/write_session_info.html index 7c689bf..09c620e 100644 --- a/docs/reference/write_session_info.html +++ b/docs/reference/write_session_info.html @@ -8,21 +8,25 @@ Write session info to a file — write_session_info • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/write_sheet.html b/docs/reference/write_sheet.html index 857d205..d44e6ff 100644 --- a/docs/reference/write_sheet.html +++ b/docs/reference/write_sheet.html @@ -8,21 +8,25 @@ Write a single sheet with formatting common to all sheets. — write_sheet • phenoptrReports + + - + + - - + + + @@ -30,19 +34,22 @@ - + + @@ -53,6 +60,7 @@ + @@ -69,7 +77,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -106,7 +114,6 @@ Reference - + + + diff --git a/docs/reference/write_summary_charts.html b/docs/reference/write_summary_charts.html index b474dbb..3069f97 100644 --- a/docs/reference/write_summary_charts.html +++ b/docs/reference/write_summary_charts.html @@ -8,21 +8,25 @@ Create summary charts from the results of an analysis — write_summary_charts • phenoptrReports + + - + + - - + + + @@ -30,8 +34,8 @@ - + @@ -39,6 +43,7 @@ + @@ -49,6 +54,7 @@ + @@ -65,7 +71,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -102,7 +108,6 @@ Reference - + + + diff --git a/docs/reference/write_summary_report.html b/docs/reference/write_summary_report.html index dd0acf6..ec31c0b 100644 --- a/docs/reference/write_summary_report.html +++ b/docs/reference/write_summary_report.html @@ -8,21 +8,25 @@ Create a summary report for a cell seg data file — write_summary_report • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + + diff --git a/docs/reference/write_summary_sheet.html b/docs/reference/write_summary_sheet.html index 20c8261..0e1510e 100644 --- a/docs/reference/write_summary_sheet.html +++ b/docs/reference/write_summary_sheet.html @@ -8,21 +8,25 @@ Write a summary table to an Excel workbook — write_summary_sheet • phenoptrReports + + - + + - - + + + @@ -30,14 +34,15 @@ - + + @@ -48,6 +53,7 @@ + @@ -64,7 +70,7 @@ phenoptrReports - 0.2.4 + 0.2.5 @@ -101,7 +107,6 @@ Reference - + + +