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1 parent e145133 commit e19abd2Copy full SHA for e19abd2
src/docs/usage.rst
@@ -55,7 +55,15 @@ Arguments
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-
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* - highlight
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- -h
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- - Interval or single base position that will be highlighted in the visualization. Example: 132400-132500 or 132440
+ - Named intervals or single base positions that will be highlighted in the visualization. Example: myinterval:132400-132500 or myvariant:132440
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+ -
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+ * - vcf
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+ - -v
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+ - Path to a VCF file. Variants from the VCF file will be highlighted in the resulting plot similar to the highlight option.
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+ * - bed
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+ - Path to a BED file. Regions from the BED file will be highlighted in the resulting plot similar to the highlight option.
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* - plot-all
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- -p
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