v0.9.0

Added

lightmotif

• DenseMatrix::ravel to get the array of a DenseMatrix as a single continuous slice.

lightmotif-py

• Support for protein alphabets (#5).
• protein property to CountMatrix, WeightMatrix, ScoringMatrix, EncodedSequence and StripedSequence.
• Scanner class to use the new DNA scanning algorithm.
• Buffer protocol implmementation for ScoringMatrix objects.
• lightmotif.load function to load one or more Motif from a file-like object (#6).
• Motif.name property to store the optional name of a Motif.
• Several Motif subclasses to store motif and metadata loaded from a file.
• Type annotations for the lightmotif.lib package.

Fixed

lightmotif-io

• Parsing of floating-point numbers in JASPAR parser.
• Panic on error unwrapping in lightmotif-io.

Changed

lightmotif

• Rewrite DenseMatrix with constant platform-specific alignment to reduce amount of unsafe code.

Removed

lightmotif-py

• alphabet parameter of ScoringMatrix and EncodedSequence.