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Hi, thanks for checking out Ark! One way that you can speed it up is setting And there are always some optimizations that we can do as well. |
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Is it common to have the generate_cell_table take several hours to complete (~3 hours for 450000 cells - on a pretty fast system). I am using very large files (Akoya experiments) and there are 400K-2 million cells per image. I only have one fov for the entire image (I segmented the entire image as a whole (both nuclear and membrane). Is there a way to break up the segmentation files by cell id and analyze the images in parallel? I realize this is a one time analysis so it may not be high on the priority.
Thank you for a great tool.
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